Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30331
         (709 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g12100.1 68416.m01506 cation efflux family protein / metal to...    29   3.0  
At2g24210.1 68415.m02892 myrcene/ocimene synthase (TPS10) nearly...    29   3.0  
At5g22930.1 68418.m02681 hypothetical protein                          27   9.2  

>At3g12100.1 68416.m01506 cation efflux family protein / metal
           tolerance protein, putative member of the cation
           diffusion facilitator (CDF) family, or cation efflux
           (CE) family, PMID:11500563
          Length = 393

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = +2

Query: 38  FFGQTSDISISHSSVLFVIW*LWNIVLKSNK 130
           FFG+  D+ ++  SVL ++W ++ +V   N+
Sbjct: 79  FFGEGKDVDMAKVSVLEMVWEVFGVVTSGNR 109


>At2g24210.1 68415.m02892 myrcene/ocimene synthase (TPS10) nearly
           identical to GI:9957293; contains Pfam profile: PF01397
           terpene synthase family
          Length = 591

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 10/34 (29%), Positives = 21/34 (61%)
 Frame = +3

Query: 477 NFKAYIIIKFAKCNISVMRQISTEFLAGSSQWML 578
           N+K  ++++FAK + ++++ I  E L   S W +
Sbjct: 257 NYKNLVVVEFAKIDFNIVQAIHQEELKNVSSWWM 290


>At5g22930.1 68418.m02681 hypothetical protein
          Length = 248

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +1

Query: 64  YISFFCIVCYLVIVEHCF 117
           ++ F C +C+L+ V  CF
Sbjct: 6   FVCFLCFLCFLIYVSECF 23


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,072,209
Number of Sequences: 28952
Number of extensions: 209026
Number of successful extensions: 310
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 306
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 310
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1526202912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)