Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30330
(620 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 182 3e-47
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 109 3e-25
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 101 1e-22
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 86 4e-18
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 54 2e-08
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 54 2e-08
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 53 3e-08
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 50 3e-07
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 39 7e-04
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 36 0.006
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 35 0.011
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 32 0.058
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 29 0.41
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi... 29 0.72
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 28 0.95
SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineur... 27 2.2
SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosacc... 27 2.2
SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces... 27 2.2
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|... 27 2.9
SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|... 26 3.8
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 26 5.1
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S... 26 5.1
SPBC1271.02 |stt3||oligosaccharyltransferase subunit Stt3|Schizo... 26 5.1
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 26 5.1
SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr 1|... 25 6.7
SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 6.7
SPAC29A4.20 |||RNA polymerase II elongator complex, histone acet... 25 8.8
SPBC2G2.16 |||mannose-6-phosphate isomerase |Schizosaccharomyces... 25 8.8
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc... 25 8.8
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa... 25 8.8
SPAC12B10.16c |mug157||conserved protein |Schizosaccharomyces po... 25 8.8
SPBC1683.09c |frp1||ferric-chelate reductase Frp1|Schizosaccharo... 25 8.8
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 182 bits (444), Expect = 3e-47
Identities = 80/90 (88%), Positives = 83/90 (92%)
Frame = +2
Query: 2 AVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHH 181
AVFPSIVGRPRH G+MVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIV NWDDMEKIWHH
Sbjct: 29 AVFPSIVGRPRHHGIMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVNNWDDMEKIWHH 88
Query: 182 TFYNELRVAPEEHPVLLTEAPLNPRPTERR 271
TFYNELRVAPEEHP LLTEAPLNP+ +
Sbjct: 89 TFYNELRVAPEEHPCLLTEAPLNPKSNREK 118
Score = 167 bits (405), Expect = 1e-42
Identities = 78/86 (90%), Positives = 83/86 (96%)
Frame = +1
Query: 250 PQANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYAL 429
P++NREKMTQI+FETFN PA YVAIQAVLSLYASGRTTGIVLDSGDGV+HTVPIYEGYAL
Sbjct: 112 PKSNREKMTQIIFETFNAPAFYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYAL 171
Query: 430 PHAILRLDLAGRDLTDYLMKILTERG 507
PHAI+RLDLAGRDLTDYLMKIL ERG
Sbjct: 172 PHAIMRLDLAGRDLTDYLMKILMERG 197
Score = 68.5 bits (160), Expect = 7e-13
Identities = 32/37 (86%), Positives = 35/37 (94%)
Frame = +3
Query: 510 SFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSS 620
+F+TTAEREIVRDIKEKLCYVALDFEQE+ TAA SSS
Sbjct: 199 TFSTTAEREIVRDIKEKLCYVALDFEQELQTAAQSSS 235
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 109 bits (262), Expect = 3e-25
Identities = 50/86 (58%), Positives = 64/86 (74%)
Frame = +1
Query: 250 PQANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYAL 429
P ANREKM + MFE + +YVAIQAVLSLYA G ++G+V+DSGDGV+H VP+YE L
Sbjct: 112 PVANREKMCETMFERYGFGGVYVAIQAVLSLYAQGLSSGVVVDSGDGVTHIVPVYESVVL 171
Query: 430 PHAILRLDLAGRDLTDYLMKILTERG 507
H + RLD+AGRD T YL+ +L +G
Sbjct: 172 NHLVGRLDVAGRDATRYLISLLLRKG 197
Score = 84.6 bits (200), Expect = 1e-17
Identities = 37/84 (44%), Positives = 59/84 (70%), Gaps = 2/84 (2%)
Frame = +2
Query: 8 FPSIVGRP--RHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHH 181
FPSIVGRP R + + KD VGDEA++ R +L +KYP+E+GI+ ++++M ++W +
Sbjct: 29 FPSIVGRPILRAEEKTGNVQIKDVMVGDEAEAVRSLLQVKYPMENGIIRDFEEMNQLWDY 88
Query: 182 TFYNELRVAPEEHPVLLTEAPLNP 253
TF+ +L++ P +LLTE P+NP
Sbjct: 89 TFFEKLKIDPRGRKILLTEPPMNP 112
Score = 36.7 bits (81), Expect = 0.003
Identities = 16/30 (53%), Positives = 21/30 (70%)
Frame = +3
Query: 498 RARLSFTTTAEREIVRDIKEKLCYVALDFE 587
R +F TA+ E VR++KEKLCYV+ D E
Sbjct: 195 RKGYAFNRTADFETVREMKEKLCYVSYDLE 224
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 101 bits (241), Expect = 1e-22
Identities = 43/83 (51%), Positives = 64/83 (77%)
Frame = +1
Query: 259 NREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHA 438
N+EK+ + +ET N PA+ ++Q VL+LYAS RTTGIVL+ GDG++H+VPIY+G+++P A
Sbjct: 120 NKEKIAEYFYETLNVPALSFSLQPVLALYASARTTGIVLECGDGLTHSVPIYDGFSIPSA 179
Query: 439 ILRLDLAGRDLTDYLMKILTERG 507
I + ++ GRD+TDYL L + G
Sbjct: 180 IQQEEIGGRDVTDYLQLQLRKSG 202
Score = 97.1 bits (231), Expect = 2e-21
Identities = 46/90 (51%), Positives = 63/90 (70%), Gaps = 2/90 (2%)
Frame = +2
Query: 5 VFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHT 184
+FP+ VGR +H+ VM QKD +VG EAQ+ RG+L ++ PIE GI+ NW DME+IW +
Sbjct: 34 LFPTCVGRIKHERVMPSSIQKDMFVGSEAQNLRGLLKIQRPIERGIIQNWSDMEEIWSYI 93
Query: 185 FYN-ELRVAPEEHPVLLTEAPL-NPRPTER 268
+ + +L PEEHP+LLTE PL N R E+
Sbjct: 94 YSDQQLNTLPEEHPLLLTEPPLANIRNKEK 123
Score = 40.7 bits (91), Expect = 2e-04
Identities = 17/26 (65%), Positives = 22/26 (84%)
Frame = +3
Query: 519 TTAEREIVRDIKEKLCYVALDFEQEM 596
++AE+EIVR+IKEK CYVA DF E+
Sbjct: 207 SSAEKEIVREIKEKCCYVASDFRSEI 232
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 85.8 bits (203), Expect = 4e-18
Identities = 42/93 (45%), Positives = 61/93 (65%), Gaps = 8/93 (8%)
Frame = +1
Query: 250 PQANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRT--------TGIVLDSGDGVSHTV 405
P NRE +IMFE+FN +Y+A+QAVL+L AS + TG V+DSGDGV+H +
Sbjct: 135 PPENRENTAEIMFESFNCAGLYIAVQAVLALAASWTSSKVTDRSLTGTVVDSGDGVTHII 194
Query: 406 PIYEGYALPHAILRLDLAGRDLTDYLMKILTER 504
P+ EGY + +I + LAGRD+T ++ +L +R
Sbjct: 195 PVAEGYVIGSSIKTMPLAGRDVTYFVQSLLRDR 227
Score = 68.5 bits (160), Expect = 7e-13
Identities = 29/63 (46%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Frame = +2
Query: 68 DSYVGDEAQSKRGI-LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAP 244
D ++G++A K +L YPI HG + NWD ME+ W + + LR PE+H LLTE P
Sbjct: 73 DFFIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTEPP 132
Query: 245 LNP 253
LNP
Sbjct: 133 LNP 135
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 54.0 bits (124), Expect = 2e-08
Identities = 25/83 (30%), Positives = 45/83 (54%), Gaps = 2/83 (2%)
Frame = +1
Query: 250 PQANREKMTQIMFETFNTPAMYVAIQAVLSLYASGR--TTGIVLDSGDGVSHTVPIYEGY 423
P R MT+++FE +N P++ I + S Y + + ++GIVL+ G+ SH +P+ G
Sbjct: 127 PTYVRSTMTELLFELYNAPSVAYGIDGLFSFYHNTKPSSSGIVLNLGNAASHVIPVLNGE 186
Query: 424 ALPHAILRLDLAGRDLTDYLMKI 492
+ R+ G + YL+K+
Sbjct: 187 RILSEAKRISWGGSQSSSYLLKL 209
Score = 44.0 bits (99), Expect = 2e-05
Identities = 25/84 (29%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Frame = +2
Query: 5 VFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTL-KYPIEHGIVTNWDDMEKIWHH 181
VF ++V R R + + + + VG++ + G ++ + P E +++NWD ME++ +
Sbjct: 49 VFDNLVSRYRDRK----LSRTSTLVGNDTLIEVGSRSIARSPFERNVISNWDLMEQVLDY 104
Query: 182 TFYNELRVAPEEHPVLLTEAPLNP 253
TF +L + EHP+ +TE NP
Sbjct: 105 TFL-KLGIDRMEHPICMTEPLANP 127
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 54.0 bits (124), Expect = 2e-08
Identities = 28/91 (30%), Positives = 44/91 (48%)
Frame = +1
Query: 250 PQANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYAL 429
P NR K + MFE+ PA Y+A Q + +ASG+ T ++D G S IY+G+ L
Sbjct: 110 PPENRVKTLETMFESLRCPATYLAKQETCAAFASGKGTACLVDIGAERSSVSAIYDGFVL 169
Query: 430 PHAILRLDLAGRDLTDYLMKILTERGSRSLP 522
+G + D L + L ++ +P
Sbjct: 170 QKGYQVQHFSGNAINDILAQTLRDKNFEVMP 200
Score = 44.0 bits (99), Expect = 2e-05
Identities = 24/73 (32%), Positives = 35/73 (47%)
Frame = +2
Query: 110 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPRPTERR*PRSCS 289
+ +K I +G V NWD +W + +L+ P EHP+L+TE P + P R
Sbjct: 63 MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITE-PFDNPPENRVKTLETM 121
Query: 290 KHSTRPPCTSPSK 328
S R P T +K
Sbjct: 122 FESLRCPATYLAK 134
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 53.2 bits (122), Expect = 3e-08
Identities = 28/81 (34%), Positives = 42/81 (51%)
Frame = +1
Query: 259 NREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHA 438
+RE TQ FE P +A + ++ LYA G G+V+D G + PI +G + A
Sbjct: 161 DRELATQFFFEECQVPGFTIAYEPLMGLYAIGILHGLVIDIGYEKTDITPILDGQIIFTA 220
Query: 439 ILRLDLAGRDLTDYLMKILTE 501
+L L GR +T +L +L E
Sbjct: 221 TQQLPLGGRYMTQHLQNLLRE 241
Score = 25.8 bits (54), Expect = 5.1
Identities = 7/21 (33%), Positives = 13/21 (61%)
Frame = +2
Query: 125 PIEHGIVTNWDDMEKIWHHTF 187
PI+ G V +W+ ++ W H +
Sbjct: 113 PIQRGRVVDWEALKAFWKHLY 133
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 50.0 bits (114), Expect = 3e-07
Identities = 21/71 (29%), Positives = 40/71 (56%)
Frame = +1
Query: 250 PQANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYAL 429
PQ+ R+++ + FE + PA Y+ QAV +A+ ++T +++D G + P+ +G +
Sbjct: 113 PQSVRQQIMEAAFEQLHVPAFYLTKQAVCVAFANSKSTALIVDIGSDNASVTPVVDGLII 172
Query: 430 PHAILRLDLAG 462
I + LAG
Sbjct: 173 RKGIFKQSLAG 183
Score = 41.9 bits (94), Expect = 7e-05
Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
Frame = +2
Query: 29 PRHQGVMVGMGQKDSYVGDEAQSKRGI--LTLKYPIEHGIVTNWDDMEKIWHHTFYNELR 202
P + GV + ++ YV DE Q I + +K +GI+ +W+ W +L+
Sbjct: 37 PSYYGVRSDVTGRNKYVVDELQIHAPIPGMEVKNGKSNGIIQDWESTLYTWERGLKEKLQ 96
Query: 203 VAPEEHPVLLTEAPLNPRPTERR 271
V P E+ +++TE NP+ ++
Sbjct: 97 VNPTEYAMMITEPSWNPQSVRQQ 119
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 38.7 bits (86), Expect = 7e-04
Identities = 15/46 (32%), Positives = 30/46 (65%)
Frame = +1
Query: 367 IVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTER 504
+V+DSG +H +P+ + A+ R+D+ G+ LT+YL ++++ R
Sbjct: 159 LVIDSGYSFTHIIPVIDFSVQEQAVKRVDVGGKLLTNYLKEVISYR 204
Score = 29.5 bits (63), Expect = 0.41
Identities = 11/23 (47%), Positives = 18/23 (78%)
Frame = +3
Query: 528 EREIVRDIKEKLCYVALDFEQEM 596
E IV +IKE +CYV+ +F+++M
Sbjct: 211 ETYIVNEIKESVCYVSQNFKEDM 233
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 35.5 bits (78), Expect = 0.006
Identities = 17/77 (22%), Positives = 40/77 (51%)
Frame = +1
Query: 265 EKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAIL 444
EK+ I+F + + +++ + + +G + V+D G + + EG +P++ +
Sbjct: 260 EKILDILFFDLHFGKAAIVQESLCTSFGAGMSAACVVDMGAQKTSISCVEEGVVVPNSRI 319
Query: 445 RLDLAGRDLTDYLMKIL 495
+++ G D+T MK+L
Sbjct: 320 KINYGGDDITLLFMKLL 336
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 34.7 bits (76), Expect = 0.011
Identities = 25/71 (35%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
Frame = +2
Query: 233 TEAPLNPRPTERR*PRSCSKHSTRPPCTSPSKPCSRCTRPVVPPVS-CWTPATVSPTPCP 409
T+ NP PT SC+ ++ PP T S S P VPP S T + PT
Sbjct: 158 TDTNSNPLPTTST---SCTTSTSIPP-TGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTS 213
Query: 410 STKDTHSPTPS 442
ST SP P+
Sbjct: 214 STDTNSSPLPT 224
Score = 30.3 bits (65), Expect = 0.23
Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Frame = +2
Query: 281 SCSKHSTRPPCTSPSKPCSRCTRPVVPPVS-CWTPATVSPTPCPSTKDTHSPTPS 442
SC+ ++ PP T S S P VPP S T + PT ST +P P+
Sbjct: 114 SCTTSTSIPP-TGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSNPLPT 167
Score = 29.1 bits (62), Expect = 0.54
Identities = 23/71 (32%), Positives = 30/71 (42%), Gaps = 1/71 (1%)
Frame = +2
Query: 233 TEAPLNPRPTERR*PRSCSKHSTRPPCTSPSKPCSRCTRPVVPPVS-CWTPATVSPTPCP 409
T+ +P PT SC+ ++ P T S S P VPP S T + PT
Sbjct: 215 TDTNSSPLPTTST---SCTTSTSIP--TGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTS 269
Query: 410 STKDTHSPTPS 442
ST SP P+
Sbjct: 270 STDTNSSPLPT 280
Score = 27.9 bits (59), Expect = 1.3
Identities = 19/73 (26%), Positives = 25/73 (34%)
Frame = +2
Query: 221 PVLLTEAPLNPRPTERR*PRSCSKHSTRPPCTSPSKPCSRCTRPVVPPVSCWTPATVSPT 400
PV T P + T P + + + PS S T +PP T
Sbjct: 300 PVTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLPSTSTSCTTSTSIPPTGNSTTPVTPTV 359
Query: 401 PCPSTKDTHSPTP 439
P ST T +P P
Sbjct: 360 PPTSTSSTSTPPP 372
Score = 27.9 bits (59), Expect = 1.3
Identities = 17/56 (30%), Positives = 25/56 (44%)
Frame = +2
Query: 275 PRSCSKHSTRPPCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPCPSTKDTHSPTPS 442
P S S ST PP S S + + + SC T ++ PT +T T + P+
Sbjct: 361 PTSTSSTSTPPPPASTSSTGTSSSPLLSTSTSCTTSTSIPPTGNSTTPVTPTVPPT 416
Score = 27.9 bits (59), Expect = 1.3
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = +2
Query: 281 SCSKHSTRPPCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPC-PSTKDTHSPTP 439
SC+ ++ PP + + P + P VPP S TP T T C ST ++ TP
Sbjct: 392 SCTTSTSIPPTGNSTTPVT----PTVPPTSSSTPLTT--TNCTTSTSVPYTSTP 439
Score = 26.6 bits (56), Expect = 2.9
Identities = 17/56 (30%), Positives = 24/56 (42%)
Frame = +2
Query: 275 PRSCSKHSTRPPCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPCPSTKDTHSPTPS 442
P S S ST PP S S + + SC T ++ PT +T T + P+
Sbjct: 307 PTSTSSTSTPPPPASTSSTGTSSSPLPSTSTSCTTSTSIPPTGNSTTPVTPTVPPT 362
Score = 25.4 bits (53), Expect = 6.7
Identities = 17/73 (23%), Positives = 25/73 (34%)
Frame = +2
Query: 221 PVLLTEAPLNPRPTERR*PRSCSKHSTRPPCTSPSKPCSRCTRPVVPPVSCWTPATVSPT 400
P+ T P + T P + + + P+ S T +PP T
Sbjct: 246 PITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTTSTSCTTSTSIPPTGNSTTPVTPTV 305
Query: 401 PCPSTKDTHSPTP 439
P ST T +P P
Sbjct: 306 PPTSTSSTSTPPP 318
Score = 25.4 bits (53), Expect = 6.7
Identities = 22/77 (28%), Positives = 32/77 (41%), Gaps = 2/77 (2%)
Frame = +2
Query: 221 PVLLTEAPLNPRPTERR*P--RSCSKHSTRPPCTSPSKPCSRCTRPVVPPVSCWTPATVS 394
PV T P + T P + S ++ P S S C+ T +PP T V+
Sbjct: 354 PVTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLLSTSTSCTTSTS--IPPTGNST-TPVT 410
Query: 395 PTPCPSTKDTHSPTPSC 445
PT P++ T T +C
Sbjct: 411 PTVPPTSSSTPLTTTNC 427
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 32.3 bits (70), Expect = 0.058
Identities = 17/45 (37%), Positives = 21/45 (46%)
Frame = +2
Query: 308 PCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPCPSTKDTHSPTPS 442
P T+P P T PV P S P+ P P PS++ P PS
Sbjct: 1037 PSTAPPVPIPTSTPPV-PKSSSGAPSAPPPVPAPSSEIPSIPAPS 1080
Score = 28.3 bits (60), Expect = 0.95
Identities = 18/51 (35%), Positives = 21/51 (41%), Gaps = 5/51 (9%)
Frame = +2
Query: 305 PPCTSPSKPCSRCTRPVVPPVSCWTP-----ATVSPTPCPSTKDTHSPTPS 442
PP +P P P VPP S P A + P P P+ K P PS
Sbjct: 1193 PPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVPAPS 1243
Score = 27.5 bits (58), Expect = 1.7
Identities = 25/81 (30%), Positives = 29/81 (35%), Gaps = 2/81 (2%)
Frame = +2
Query: 206 APEEHPVLLTEAPLNPRPTERR*PRSCSKHSTRPPCTSPSKPCSRCTRP--VVPPVSCWT 379
AP P +E P P P+ S PP PS +P VPPV
Sbjct: 1062 APPPVPAPSSEIPSIPAPSGAP---PVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPA-- 1116
Query: 380 PATVSPTPCPSTKDTHSPTPS 442
P+ P P PS P PS
Sbjct: 1117 PSGAPPVPKPSVAAPPVPVPS 1137
Score = 25.8 bits (54), Expect = 5.1
Identities = 17/48 (35%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
Frame = +2
Query: 305 PPCTSPSKPCSRCTRPV--VPPVSCWTPATVSPTPCPSTKDTHSPTPS 442
PP +PS +P VPPV P+ P P PS P PS
Sbjct: 1169 PPVPAPSSGIPPVPKPAAGVPPVP--PPSEAPPVPKPSVGVPPVPPPS 1214
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 29.5 bits (63), Expect = 0.41
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = +2
Query: 329 PCSRCTRPVVPPVSCWTPATVSPTPCPSTKDTHSP 433
PC+ + PPV+C TP P C K H P
Sbjct: 621 PCTCGRTRLYPPVACGTPIPDCPYLCVLPKSCHHP 655
>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 690
Score = 28.7 bits (61), Expect = 0.72
Identities = 25/92 (27%), Positives = 38/92 (41%), Gaps = 7/92 (7%)
Frame = +2
Query: 179 HTFYNELRVAPEEHPVLL---TEAPLNP---RPTERR*PRS-CSKHSTRPPCTSPSKPCS 337
H +N +P +P L T P NP P P S S+H + +PS +
Sbjct: 201 HPIHNHPYSSPTSYPPPLCPATYCPSNPPQLAPATAIAPSSQSSQHKSVNYSVTPSSINN 260
Query: 338 RCTRPVVPPVSCWTPATVSPTPCPSTKDTHSP 433
P+ P ++ W P T PT P + + + P
Sbjct: 261 HTAVPLSPTLAVWLPMT-QPTFQPPSANVYQP 291
>SPAC20G8.05c |cdc15||cell division control protein
Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 927
Score = 28.3 bits (60), Expect = 0.95
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = -1
Query: 92 VPHLLHKSPSVPYRPSRPDGGAFPRSRGTR 3
+ L+ K+PS PY SRP A S TR
Sbjct: 306 IDQLISKAPSYPYSSSRPSASASLASSPTR 335
>SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineurin
deletion Rnc1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 398
Score = 27.1 bits (57), Expect = 2.2
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +2
Query: 329 PCSRCTRPVVPPVSCWTPATVSPTPCPST 415
P SR T+P+ S +P VSP PST
Sbjct: 262 PVSRLTQPLPSLASTASPQQVSPPAAPST 290
>SPBC4C3.12 |sep1||fork head transcription factor
Sep1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 663
Score = 27.1 bits (57), Expect = 2.2
Identities = 22/74 (29%), Positives = 32/74 (43%)
Frame = +2
Query: 188 YNELRVAPEEHPVLLTEAPLNPRPTERR*PRSCSKHSTRPPCTSPSKPCSRCTRPVVPPV 367
Y+EL +A +E P L P P+ + + S KP S+ TRP +P
Sbjct: 23 YSELPIAYQEIP--LQSLPPYPKVASKL--KGVVAGGKENNIASFQKPSSKATRPYIPSY 78
Query: 368 SCWTPATVSPTPCP 409
+ T +V P P P
Sbjct: 79 TRLT-YSVPPLPIP 91
>SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 466
Score = 27.1 bits (57), Expect = 2.2
Identities = 12/36 (33%), Positives = 15/36 (41%)
Frame = +2
Query: 305 PPCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPCPS 412
PP P + T PV PV+ A P P P+
Sbjct: 367 PPPVMPQPAAAAVTTPVAAPVAAAAAAVPVPPPAPA 402
>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1752
Score = 26.6 bits (56), Expect = 2.9
Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
Frame = +2
Query: 221 PVLLTEAPLNPRPTERR*PRSCSKHSTRPPCTSPSKPCSRCTRPVVPPVS-CWTPATVSP 397
P + +P + PT + +S P SP+ P T P P S ++P + S
Sbjct: 1569 PAYMPSSP-SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSATSPSYSPTSPSYSPTSPSY 1627
Query: 398 TPCPSTKDTHSPT 436
+P T ++SPT
Sbjct: 1628 SP---TSPSYSPT 1637
>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 194
Score = 26.2 bits (55), Expect = 3.8
Identities = 18/51 (35%), Positives = 21/51 (41%)
Frame = +3
Query: 345 RVRSYHRYRAGLRRRCLPHRAHLRRIRTPPRHPASGLSRSRPHRLPHEDPH 497
R RS HR+ G RR P+R HL R RH + R R H
Sbjct: 142 RTRSNHRH--GSHRRHEPYRTHLSRHH---RHSTTNYHSKRDDRYERRREH 187
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 25.8 bits (54), Expect = 5.1
Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Frame = +2
Query: 185 FYNELRVAPEEHPVLLTE--APLNPRPTERR*PRSCSKHSTRP 307
+Y L E+HP+LLT+ A L PR R R K P
Sbjct: 1399 YYRALNFYLEQHPMLLTDLLAALTPRIDHPRVIRIFEKSENTP 1441
>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
Tor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2337
Score = 25.8 bits (54), Expect = 5.1
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -2
Query: 121 FEGQDTSFALCLISYIRVLLSHTDHHA 41
+EG+DT+ +Y+R++L TD A
Sbjct: 74 YEGEDTTRITRFANYLRIILPGTDQKA 100
>SPBC1271.02 |stt3||oligosaccharyltransferase subunit
Stt3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 752
Score = 25.8 bits (54), Expect = 5.1
Identities = 13/40 (32%), Positives = 18/40 (45%)
Frame = +3
Query: 441 PASGLSRSRPHRLPHEDPHRARLSFTTTAEREIVRDIKEK 560
P G R+R +LP +DP + T +VR K K
Sbjct: 677 PNQGYDRARNQKLPSKDPQLFTIEEAFTTVHHLVRLYKVK 716
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 25.8 bits (54), Expect = 5.1
Identities = 27/85 (31%), Positives = 32/85 (37%), Gaps = 9/85 (10%)
Frame = +2
Query: 236 EAP-LNPRPTERR*PRSCSKHSTRPPCTSP-----SKPCSRCTRPVVPPVSCWT---PAT 388
+AP L P R P S P +S S+ S T P PP + T PA
Sbjct: 864 DAPMLGQLPMRRAAPSMAPVRSPFPGASSAQPAAMSRTSSVSTLPPPPPTASMTASAPAI 923
Query: 389 VSPTPCPSTKDTHSPTPSCVWT*PV 463
SP P + H PT S PV
Sbjct: 924 ASPPPPKVGETYHPPTASGTRVPPV 948
Score = 25.4 bits (53), Expect = 6.7
Identities = 26/88 (29%), Positives = 37/88 (42%), Gaps = 1/88 (1%)
Frame = +2
Query: 164 EKIWHHTFYNELRVAPEEHPVLLTE-APLNPRPTERR*PRSCSKHSTRPPCTSPSKPCSR 340
E+I T E P H + T AP+ P+ ++ + S T P TS + P +
Sbjct: 784 EEIQRLTMLLEPHAVPPIHQIKQTGYAPVQPKTSQ-----ASSILPTVPRTTSYTSPYAT 838
Query: 341 CTRPVVPPVSCWTPATVSPTPCPSTKDT 424
+ + TPA V P P PST T
Sbjct: 839 TSSHI-------TPADVHPLPPPSTSTT 859
>SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 785
Score = 25.4 bits (53), Expect = 6.7
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = +3
Query: 246 STPGQQR-EDDPDHVRNIQHARHVRRHPSRALAVRV 350
ST Q R EDD + R ++ R+H + A VRV
Sbjct: 692 STVAQTRVEDDSERKRTLEKVDESRKHQADACIVRV 727
>SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 551
Score = 25.4 bits (53), Expect = 6.7
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +3
Query: 204 SPPRNTQSCSLRLPSTPGQQREDDPDHVRN 293
SPP++T+ S R PS P ++ V+N
Sbjct: 285 SPPQSTRPSSTRFPSVPLSDEKNSIVSVKN 314
>SPAC29A4.20 |||RNA polymerase II elongator complex, histone
acetyltransferase subunit |Schizosaccharomyces pombe|chr
1|||Manual
Length = 544
Score = 25.0 bits (52), Expect = 8.8
Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 4/29 (13%)
Frame = +3
Query: 411 LRRIRTPPRHPASGLS----RSRPHRLPH 485
+R++R P ASG++ +PHR PH
Sbjct: 70 MRKLRAKPVRTASGIAVVAVMCKPHRCPH 98
>SPBC2G2.16 |||mannose-6-phosphate isomerase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 412
Score = 25.0 bits (52), Expect = 8.8
Identities = 12/43 (27%), Positives = 21/43 (48%)
Frame = +3
Query: 309 HVRRHPSRALAVRVRSYHRYRAGLRRRCLPHRAHLRRIRTPPR 437
+VR HP A+ +R H Y +G C+ ++ R+ P+
Sbjct: 248 YVRLHPGEAVFLRALDPHAYVSGNIIECMAASDNVIRLGFTPK 290
>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1016
Score = 25.0 bits (52), Expect = 8.8
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +2
Query: 311 CTSPSKPCSRCTRPVVPPV-SCWTPATVSPTPCPSTKDTHSPTPSCVWT 454
C +PS+ C + PV S T ++++PTP ++ T +PT + T
Sbjct: 825 CYNPSQ--YGCDNGALGPVQSSSTTSSITPTPTTTSSITPTPTTTSTTT 871
>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1628
Score = 25.0 bits (52), Expect = 8.8
Identities = 20/83 (24%), Positives = 37/83 (44%)
Frame = +3
Query: 237 RLPSTPGQQREDDPDHVRNIQHARHVRRHPSRALAVRVRSYHRYRAGLRRRCLPHRAHLR 416
R P + E++ D++R++ +RH RR P +A + R H + R R ++
Sbjct: 1427 RTPQSRSFTNENN-DNLRSV--SRHTRREPQQAQNLNARREHESQKSDRWR---QNGNVN 1480
Query: 417 RIRTPPRHPASGLSRSRPHRLPH 485
R + ++ +SR R H
Sbjct: 1481 RNPRVSNNNSTNVSRERSSEANH 1503
>SPAC12B10.16c |mug157||conserved protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 509
Score = 25.0 bits (52), Expect = 8.8
Identities = 13/42 (30%), Positives = 24/42 (57%)
Frame = +3
Query: 438 HPASGLSRSRPHRLPHEDPHRARLSFTTTAEREIVRDIKEKL 563
+PA+G P RLP + P + +F + + + + D+KE+L
Sbjct: 39 YPATG-----PLRLPFQRPATSCRTFHSKSVEQTIEDVKEQL 75
>SPBC1683.09c |frp1||ferric-chelate reductase
Frp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 564
Score = 25.0 bits (52), Expect = 8.8
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +2
Query: 44 VMVGMGQKDSYVGDEAQSKRGILTLKYPI 130
+M+G +Y+G AQ KR +LT + I
Sbjct: 165 IMIGAIHGFAYIGLAAQGKRALLTARVTI 193
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,948,898
Number of Sequences: 5004
Number of extensions: 68661
Number of successful extensions: 289
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 230
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 278
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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