Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30330
         (620 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   3.2  
EF051030-1|ABN05618.1|  118|Apis mellifera phosphoenolpyruvate c...    21   7.3  
AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.              21   7.3  
AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.          21   9.7  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   9.7  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   9.7  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             21   9.7  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 12/44 (27%), Positives = 21/44 (47%)
 Frame = +3

Query: 339 AVRVRSYHRYRAGLRRRCLPHRAHLRRIRTPPRHPASGLSRSRP 470
           ++  +++HR        C P   +L +I + P HP +  S S P
Sbjct: 62  SLTAQAHHRLYPAFSSSCDPVPGNLEQIGSRPLHPPAS-STSLP 104


>EF051030-1|ABN05618.1|  118|Apis mellifera phosphoenolpyruvate
           carboxykinase protein.
          Length = 118

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = -3

Query: 399 VGDTVAGVQHDTGGTTGRVQREHGLDGDVHG 307
           VGD +A ++ D  G    +  E+G  G   G
Sbjct: 42  VGDDIAWMKFDKEGRLRAINPEYGFFGVAPG 72


>AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.
          Length = 133

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 10/10 (100%), Positives = 10/10 (100%)
 Frame = +3

Query: 591 EMATAASSSS 620
           EMATAASSSS
Sbjct: 1   EMATAASSSS 10


>AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.
          Length = 147

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = +1

Query: 586 SRKWPPLHP 612
           +RK PPLHP
Sbjct: 98  TRKLPPLHP 106


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 11/40 (27%), Positives = 16/40 (40%)
 Frame = +3

Query: 237 RLPSTPGQQREDDPDHVRNIQHARHVRRHPSRALAVRVRS 356
           R PST G   E  P  +   +   H ++     LAV   +
Sbjct: 49  RRPSTFGSSNEALPQPISKRKDKEHKKKKSKTILAVNAEA 88


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = +1

Query: 394 SHTVPIYEGYALPHAILRLDLAGRDLTDYLMKI 492
           +H +  Y GY  P   +  D A  + T+  MK+
Sbjct: 187 NHQLISYAGYKNPDGTIIGDPANIEFTELCMKL 219


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 11/40 (27%), Positives = 16/40 (40%)
 Frame = +3

Query: 237 RLPSTPGQQREDDPDHVRNIQHARHVRRHPSRALAVRVRS 356
           R PST G   E  P  +   +   H ++     LAV   +
Sbjct: 49  RRPSTFGSSNEALPQPISKRKDKEHKKKKSKTILAVNAEA 88


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 208,056
Number of Sequences: 438
Number of extensions: 5148
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18460203
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)