Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30329
         (738 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    27   0.21 
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    27   0.21 
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    27   0.21 
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    27   0.21 
AM292363-1|CAL23175.2|  347|Tribolium castaneum gustatory recept...    25   0.64 
AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    24   1.1  
AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    23   3.4  
AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    23   3.4  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    22   5.9  
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    21   7.9  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    21   7.9  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    21   7.9  

>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 26.6 bits (56), Expect = 0.21
 Identities = 13/30 (43%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
 Frame = +3

Query: 339 HCWSWCMWLT*NSDQNW--LLGWTRKLKRL 422
           H W W +WL     Q W  L  WT K +RL
Sbjct: 463 HAWIWLLWLL---SQTWITLHIWTPKCERL 489


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 26.6 bits (56), Expect = 0.21
 Identities = 13/30 (43%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
 Frame = +3

Query: 339 HCWSWCMWLT*NSDQNW--LLGWTRKLKRL 422
           H W W +WL     Q W  L  WT K +RL
Sbjct: 463 HAWIWLLWLL---SQTWITLHIWTPKCERL 489


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 26.6 bits (56), Expect = 0.21
 Identities = 13/30 (43%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
 Frame = +3

Query: 339 HCWSWCMWLT*NSDQNW--LLGWTRKLKRL 422
           H W W +WL     Q W  L  WT K +RL
Sbjct: 463 HAWIWLLWLL---SQTWITLHIWTPKCERL 489


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 26.6 bits (56), Expect = 0.21
 Identities = 13/30 (43%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
 Frame = +3

Query: 339 HCWSWCMWLT*NSDQNW--LLGWTRKLKRL 422
           H W W +WL     Q W  L  WT K +RL
Sbjct: 463 HAWIWLLWLL---SQTWITLHIWTPKCERL 489


>AM292363-1|CAL23175.2|  347|Tribolium castaneum gustatory receptor
           candidate 42 protein.
          Length = 347

 Score = 25.0 bits (52), Expect = 0.64
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -2

Query: 185 PGSPLTGRAKVFWSCVATSEAEPRATSAVH 96
           P  P T RAK++  CV T+   P A S ++
Sbjct: 21  PSRPKT-RAKIYALCVVTALVTPSALSIIY 49


>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 17/81 (20%), Positives = 32/81 (39%)
 Frame = +1

Query: 70  RSTASKQTACTALVARGSASDVATHDQKTFARPVRGEPGKVRLGFIPEEWFQFFTRKLV* 249
           +ST++ Q   T        +   ++ Q      V   P + +  F+P E    + R +  
Sbjct: 440 KSTSTTQRTTTVSTTEAPPAPAVSNPQNEVDGSVA--PKECKQDFMPHELCDKYYRCVHG 497

Query: 250 RVLHFWCGSGNIPVQQGNLCN 312
           +   F C  G +   Q N+C+
Sbjct: 498 KPTEFACRPGTVFHTQSNICD 518


>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +1

Query: 466 GGRNRGREDGAVAREGQELLIQAKKENV 549
           GGR+  R DG    + +E  I  + ENV
Sbjct: 97  GGRDGDRGDGGGEEKKREFYIPPEVENV 124


>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 17/68 (25%), Positives = 28/68 (41%)
 Frame = +2

Query: 239 NWCDGSYTFGVGLATYLCSKEIYVMEHEYYSGLSLLVMVYVAHVKFGPKLAAWLDKEVEA 418
           +WC  S      L+T   +   Y   + YYS +  L    ++H +FG  L     K  + 
Sbjct: 234 SWCSSSQPV---LSTTNSTTNCY-NNYPYYSNMDYLSSSTMSHSQFGNGLETSWGKSRDE 289

Query: 419 TENEWNEG 442
           +   +N G
Sbjct: 290 SSWFYNSG 297


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = -1

Query: 213 FRNKAKSNFAWLTPYRASKGFLVVCGYIGSRAP 115
           ++ + K      T   A+KG LV+   +G++AP
Sbjct: 199 YQCRTKHRLTGETRLSATKGRLVITEPVGTKAP 231


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 5/9 (55%), Positives = 6/9 (66%)
 Frame = +3

Query: 339 HCWSWCMWL 365
           H W W +WL
Sbjct: 217 HAWIWLVWL 225


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 5/9 (55%), Positives = 6/9 (66%)
 Frame = +3

Query: 339 HCWSWCMWL 365
           H W W +WL
Sbjct: 450 HAWIWLVWL 458


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 5/9 (55%), Positives = 6/9 (66%)
 Frame = +3

Query: 339 HCWSWCMWL 365
           H W W +WL
Sbjct: 450 HAWIWLVWL 458


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,751
Number of Sequences: 336
Number of extensions: 3649
Number of successful extensions: 16
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19779950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)