Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30329
         (738 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F3.03c |rpa49|rpa51|DNA-directed RNA polymerase I complex |...    28   1.2  
SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces...    27   2.8  
SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c...    27   3.7  
SPCC645.12c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    26   4.9  
SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter Itr1|Schizo...    26   6.4  
SPAC6G10.03c |||abhydrolase family protein, unknown biological r...    25   8.5  
SPBC3H7.08c |||conserved fungal protein|Schizosaccharomyces pomb...    25   8.5  
SPBC13E7.08c |||RNA polymerase II associated Paf1 complex |Schiz...    25   8.5  

>SPAC2F3.03c |rpa49|rpa51|DNA-directed RNA polymerase I complex
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 425

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -1

Query: 252 PSHQFSSEELEPFFRNKAKSNFAWLTPYRAS 160
           P  +FS+  ++P   N  + N+A L PYR S
Sbjct: 226 PKEEFSAIYIKPLLENPDERNWAKLLPYRHS 256


>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1441

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = -3

Query: 367 VSHIHHDQQ*QSGVIFVLHYIDFLAAQVCCQTHTKSVRPVTP 242
           VS +  D Q QS V   LHY + + +   C +HT +   V P
Sbjct: 130 VSTLEWDMQSQSFVTNSLHYYEDVKSSNICSSHTPTQLLVDP 171


>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +3

Query: 48  NVVARGFAFNCEQTDSVHSTSRTGLCF 128
           N  + GF+F    TD+  STS+TG  F
Sbjct: 366 NQTSSGFSFGKPATDTTTSTSKTGPLF 392


>SPCC645.12c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 198

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +2

Query: 404 KEVEATENEWNEGRNQTVKALEDAIEGEKTEQ 499
           K  E  E EWN+ +N+     E+A+E E T Q
Sbjct: 85  KNKELIEEEWNDFQNEIGIIEENAVEQEITLQ 116


>SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter
           Itr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 575

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 16/57 (28%), Positives = 27/57 (47%)
 Frame = +2

Query: 263 FGVGLATYLCSKEIYVMEHEYYSGLSLLVMVYVAHVKFGPKLAAWLDKEVEATENEW 433
           +GVG+A+ +    +Y+ E         LV++YV  +  G  +A  +D   E   N W
Sbjct: 192 WGVGIASLIIP--LYLSEIAPSKIRGRLVIIYVLLITAGQVIAYGIDTAFEHVHNGW 246


>SPAC6G10.03c |||abhydrolase family protein, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 428

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 20/68 (29%), Positives = 24/68 (35%)
 Frame = -2

Query: 290 TGMLPDPHQKCKTRHTSFRVKNWNHSSGIKPSLTLPGSPLTGRAKVFWSCVATSEAEPRA 111
           TG+ P    K K     F    W  +      L L G PL  +   FWS    S   P  
Sbjct: 254 TGLEPSRPSKPKNPLPRFITFLWEQNVTPFSLLRLSG-PLGPKLMSFWSSRRFSTLPPET 312

Query: 110 TSAVHAVC 87
             A+H  C
Sbjct: 313 FRALHNYC 320


>SPBC3H7.08c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 120

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +2

Query: 242 WCDGSYTFGVGLATYLCSKEIYVMEHE 322
           WC  +YTFGV  A Y+  +   +++HE
Sbjct: 26  WCVMTYTFGV--AGYMLGQRGLLVQHE 50


>SPBC13E7.08c |||RNA polymerase II associated Paf1 complex
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 429

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +2

Query: 221 SNSSLENWCDGSYTFGVGLATY 286
           SN+ +  W DGSY+  +G   Y
Sbjct: 150 SNAQIVQWSDGSYSLRIGNDIY 171


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,930,964
Number of Sequences: 5004
Number of extensions: 58683
Number of successful extensions: 193
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)