Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30329
         (738 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0735 - 31579201-31579208,31579402-31579467,31580222-315803...    30   2.2  
07_03_1564 + 27749899-27750166,27750431-27750507,27750923-277509...    29   5.1  
05_07_0350 - 29457444-29457871,29458786-29461456                       29   5.1  
05_07_0195 - 28331445-28331641,28331841-28331934,28332019-283320...    29   5.1  
03_02_0530 + 9236323-9236346,9236933-9237185,9237872-9238119,923...    28   6.7  
02_03_0109 - 15333228-15334793,15335255-15335392,15335496-153357...    28   6.7  

>01_06_0735 -
           31579201-31579208,31579402-31579467,31580222-31580307,
           31580396-31580430,31580586-31580669,31580754-31580843,
           31581267-31581304,31582042-31582108
          Length = 157

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 19/82 (23%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
 Frame = +1

Query: 457 ESTGGRNRGREDGAVAREGQELLIQAKKENVLLQLEAAYRERLMYAYSEVKRRLDYQLEK 636
           ES    +    +G    +G E LIQ +  N++       +E  +   +E+ RR   ++EK
Sbjct: 51  ESEEEESEDESEGKAKHKGTEGLIQIENPNLVKAKNIKAKEVDLGKTTELSRREREEIEK 110

Query: 637 SNV-ERRLRPEAHGRLDSEQRD 699
               ER ++ +  G+ +  ++D
Sbjct: 111 QKAHERYMKLQEQGKTEQARKD 132


>07_03_1564 +
           27749899-27750166,27750431-27750507,27750923-27750950,
           27751117-27751261,27751351-27751429,27751515-27751633,
           27751732-27752073,27754807-27754896,27755730-27755955,
           27756398-27756784,27757176-27757496
          Length = 693

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 15/39 (38%), Positives = 17/39 (43%)
 Frame = -2

Query: 359 HTP*PAVTVRSNIRAPLHRFPCCTGMLPDPHQKCKTRHT 243
           H+P P   V  N+R  L    C   M P  HQ C   HT
Sbjct: 427 HSPKPNAMVSGNVRELLECPVCLNAMYPPIHQ-CSNGHT 464


>05_07_0350 - 29457444-29457871,29458786-29461456
          Length = 1032

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 24/70 (34%), Positives = 27/70 (38%), Gaps = 2/70 (2%)
 Frame = -2

Query: 209 GIKPSLTLPGSPLTGRAKVFWSCVATSEAEPRATSAVHAVCLL--AVERKATRDNIIYRI 36
           G  P  T PGS   GRA V W   A          A  AV     A+ER+  R     R 
Sbjct: 637 GPAPGTTTPGSGGDGRAPVMWLAAALGLLACSVAFAAAAVATTRSAIERR-RRSGWQMRA 695

Query: 35  FYMLFPKCED 6
           F  +   CED
Sbjct: 696 FQKVRFGCED 705


>05_07_0195 -
           28331445-28331641,28331841-28331934,28332019-28332099,
           28332186-28332234,28332334-28332419,28332513-28332740,
           28332819-28332857,28332958-28333047,28333207-28333269,
           28333371-28333449,28333539-28333585,28333668-28333730,
           28333814-28333864,28333977-28334060,28334162-28334226,
           28334559-28334676,28334775-28334825,28335228-28335314,
           28335633-28335712,28336676-28336793
          Length = 589

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +1

Query: 268 CGSGNIPVQQGNLCNGARILLRTVTAGH 351
           CG  + PV++GN CNGA    +    GH
Sbjct: 542 CGVVSSPVRRGNYCNGATKQQKLYQNGH 569


>03_02_0530 +
           9236323-9236346,9236933-9237185,9237872-9238119,
           9239565-9239972
          Length = 310

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 5/68 (7%)
 Frame = +1

Query: 487 EDGAVAREGQELL-IQAKKENVLLQL---EAAYRERLMYAYSEVKRRLDYQLEKSNVERR 654
           ED   AR  + L  I A+ +  LL L   +A YRE  +   S+ +++   Q   S+    
Sbjct: 166 EDAENARHRERLNEINAQYQEKLLALRARQATYREEFLRKESQARQQQYQQASMSSYANN 225

Query: 655 LRP-EAHG 675
           +RP E HG
Sbjct: 226 VRPGETHG 233


>02_03_0109 -
           15333228-15334793,15335255-15335392,15335496-15335771,
           15336357-15336422,15338140-15338487
          Length = 797

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +1

Query: 73  STASKQTACTALVARGSASDVATHDQKTFAR 165
           + A K  AC ALV+RG A+D  +    + AR
Sbjct: 630 AAAGKLEACRALVSRGGAADAGSETALSVAR 660


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,252,202
Number of Sequences: 37544
Number of extensions: 432987
Number of successful extensions: 1545
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1492
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1545
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1945321620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)