Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30329
         (738 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55341| Best HMM Match : Mt_ATP-synt_B (HMM E-Value=0.0013)          50   1e-06
SB_42833| Best HMM Match : 7tm_1 (HMM E-Value=6.2e-05)                 31   0.97 
SB_23775| Best HMM Match : Tropomyosin (HMM E-Value=0)                 29   3.0  
SB_36009| Best HMM Match : Collagen (HMM E-Value=0)                    29   3.9  
SB_21966| Best HMM Match : DnaJ (HMM E-Value=5.30001e-40)              29   5.2  
SB_31997| Best HMM Match : zf-C2H2 (HMM E-Value=1.4013e-45)            28   6.9  
SB_4107| Best HMM Match : M (HMM E-Value=8e-22)                        28   6.9  
SB_54156| Best HMM Match : Peptidase_C2 (HMM E-Value=0)                28   6.9  

>SB_55341| Best HMM Match : Mt_ATP-synt_B (HMM E-Value=0.0013)
          Length = 185

 Score = 50.4 bits (115), Expect = 1e-06
 Identities = 29/80 (36%), Positives = 40/80 (50%)
 Frame = +2

Query: 251 GSYTFGVGLATYLCSKEIYVMEHEYYSGLSLLVMVYVAHVKFGPKLAAWLDKEVEATENE 430
           G   F  GLA YL S EI ++  E Y    +    Y    K G  +A  LD   +   + 
Sbjct: 72  GQLMFFGGLAAYLLSNEILIIHEETYIAAVMGGTFYWLMKKAGGPIAEMLDNTSQEILDA 131

Query: 431 WNEGRNQTVKALEDAIEGEK 490
           +N GRN ++K L+DAI+ EK
Sbjct: 132 FNVGRNASIKHLQDAIDNEK 151


>SB_42833| Best HMM Match : 7tm_1 (HMM E-Value=6.2e-05)
          Length = 641

 Score = 31.1 bits (67), Expect = 0.97
 Identities = 19/70 (27%), Positives = 39/70 (55%), Gaps = 3/70 (4%)
 Frame = +1

Query: 508 EGQELLIQAKKENVLLQLEAAYRERLMYAYSEVKRRLDYQLEKSNVERRLRPE---AHGR 678
           EG E+L   ++ NV +       ERL + Y E   RL+ +  +S +E++ + E   + G+
Sbjct: 343 EGAEVLEPERRMNVNVLKRCECCERLAFRYQE---RLEIERIRSEIEKQKKEERKSSKGK 399

Query: 679 LDSEQRDQGD 708
           ++S ++ +G+
Sbjct: 400 VESAEKQEGN 409


>SB_23775| Best HMM Match : Tropomyosin (HMM E-Value=0)
          Length = 442

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 19/79 (24%), Positives = 40/79 (50%), Gaps = 4/79 (5%)
 Frame = +1

Query: 472 RNRGREDGAVAREGQELLIQAKKENVLLQLEA----AYRERLMYAYSEVKRRLDYQLEKS 639
           + + R +   A+E + L  + KKE   L+ +A      +ERL     E K RL+ + +K 
Sbjct: 328 KEKQRLEAKAAKEKERLEAKQKKEQERLEKQAEKEKKEKERLEKKQREEKDRLEKKEKKE 387

Query: 640 NVERRLRPEAHGRLDSEQR 696
             +R+   E + +++ +++
Sbjct: 388 EEKRKKEEEINAKIEEKKK 406


>SB_36009| Best HMM Match : Collagen (HMM E-Value=0)
          Length = 687

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
 Frame = +3

Query: 528 PGQEGERAPAARGRLQGE-AHVRLLRGEAASGLPAREVERGASSSPRSTWSTG 683
           PG +GER P      QGE  H      + A G+P  +   G   +P    + G
Sbjct: 432 PGAQGERGPRGEQGKQGEKGHAGEGGADGAPGIPGEQGPMGPVGAPGPVGNAG 484


>SB_21966| Best HMM Match : DnaJ (HMM E-Value=5.30001e-40)
          Length = 351

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 14/24 (58%), Positives = 17/24 (70%)
 Frame = -1

Query: 390 ANFGPNFT*ATYTMTSSDSPE*YS 319
           ANFGP FT  T+T TS D+ E +S
Sbjct: 89  ANFGPGFT--TFTYTSGDARETFS 110


>SB_31997| Best HMM Match : zf-C2H2 (HMM E-Value=1.4013e-45)
          Length = 1091

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 25/96 (26%), Positives = 44/96 (45%), Gaps = 3/96 (3%)
 Frame = +1

Query: 457  ESTGGRNRGREDGAVAREGQELLIQAKKENVLLQLEAAYRERLMYAYSEVKRRLDYQLEK 636
            E   G+ +     A  REG +     K EN+  +L    +E L  A +E  R+  ++LEK
Sbjct: 829  EMAEGKRKKMSTQASKREGAQTREPKKWENIAQKLSKRLKEALS-AAAEKDRQ--HELEK 885

Query: 637  SNVERRLRPEAHGRLDSEQ--RDQGD-HSGPGEAGP 735
              ++  ++      ++ +Q  RD+ D     G+ GP
Sbjct: 886  WRLQNMVKILVQREIERKQRERDREDVRENDGDVGP 921


>SB_4107| Best HMM Match : M (HMM E-Value=8e-22)
          Length = 2039

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = +1

Query: 505  REGQELLIQAKKENVLLQLEAAYRERLMYAYSEVKRRLDYQLEKSNVER 651
            REG+E    A+KEN  L+ +    ER   A S     L  +++KS  E+
Sbjct: 1102 REGEEAREVARKENTDLKRQLKDEEREKDAVSHTANELRGKVKKSEAEK 1150


>SB_54156| Best HMM Match : Peptidase_C2 (HMM E-Value=0)
          Length = 1001

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 11/38 (28%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
 Frame = +3

Query: 63  GFAFNCEQTDSVHSTSRTGLCFRCSHTRPEN--LCSPC 170
           G + +C+   +V  +++T +C  C H  P +  LC+ C
Sbjct: 106 GISRSCQACGAVRRSTKTWICRICQHENPVSIVLCNEC 143


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,097,454
Number of Sequences: 59808
Number of extensions: 491511
Number of successful extensions: 1570
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1396
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1570
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1986074805
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)