Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30329
         (738 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53340-6|AAA96210.1|  305|Caenorhabditis elegans Atp synthase b ...    41   0.001
Z46242-8|CAA86329.1|  301|Caenorhabditis elegans Hypothetical pr...    37   0.013
U00036-15|AAK29857.1|  731|Caenorhabditis elegans Hypothetical p...    30   1.5  
AF143148-1|AAD37914.1|  315|Caenorhabditis elegans R151.8B prote...    30   1.5  
U23147-2|AAC46688.1|  918|Caenorhabditis elegans Hypothetical pr...    29   2.6  
AL117201-2|CAI79268.1|  527|Caenorhabditis elegans Hypothetical ...    29   3.4  
AL117201-1|CAB55063.1|  541|Caenorhabditis elegans Hypothetical ...    29   3.4  
Z22964-2|CAA80537.1| 1759|Caenorhabditis elegans a2(IV) collagen...    29   4.5  
Z22964-1|CAA80536.1| 1758|Caenorhabditis elegans a2(IV) collagen...    29   4.5  
U53342-4|AAA96216.1| 1758|Caenorhabditis elegans Lethal protein ...    29   4.5  
U53342-3|AAA96215.1| 1759|Caenorhabditis elegans Lethal protein ...    29   4.5  
U22327-1|AAA64312.1| 1795|Caenorhabditis elegans alpha2(IV) coll...    29   4.5  
Z79755-7|CAB02103.1|  466|Caenorhabditis elegans Hypothetical pr...    28   6.0  
AL023845-6|CAA19536.1|  168|Caenorhabditis elegans Hypothetical ...    28   6.0  

>U53340-6|AAA96210.1|  305|Caenorhabditis elegans Atp synthase b
           homolog protein 2 protein.
          Length = 305

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 21/57 (36%), Positives = 34/57 (59%)
 Frame = +1

Query: 532 AKKENVLLQLEAAYRERLMYAYSEVKRRLDYQLEKSNVERRLRPEAHGRLDSEQRDQ 702
           A KE++ LQLEA YR+ +    +E+KRR+DY  E    + R+  E   +L + + D+
Sbjct: 223 ALKESMALQLEATYRKNVQSVATELKRRIDYLKETEESKARVEREQLLKLINSEVDK 279


>Z46242-8|CAA86329.1|  301|Caenorhabditis elegans Hypothetical
           protein F35G12.10 protein.
          Length = 301

 Score = 37.1 bits (82), Expect = 0.013
 Identities = 16/39 (41%), Positives = 26/39 (66%)
 Frame = +1

Query: 538 KENVLLQLEAAYRERLMYAYSEVKRRLDYQLEKSNVERR 654
           K+++ LQLEAAYR+ +    +E+KRR++Y  E    + R
Sbjct: 223 KDSMQLQLEAAYRKNVQTISNEIKRRIEYLKETEETKAR 261



 Score = 28.3 bits (60), Expect = 6.0
 Identities = 15/55 (27%), Positives = 28/55 (50%)
 Frame = +2

Query: 251 GSYTFGVGLATYLCSKEIYVMEHEYYSGLSLLVMVYVAHVKFGPKLAAWLDKEVE 415
           G Y F  GL  +L +KE++V E + +  +  ++   +     G K+ A L K+ +
Sbjct: 126 GPYLFFGGLFAFLVNKELWVFEEQGHMTVGWILFYLLVSRTAGYKIDAGLYKDYQ 180


>U00036-15|AAK29857.1|  731|Caenorhabditis elegans Hypothetical
           protein R151.8 protein.
          Length = 731

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
 Frame = -2

Query: 431 IRSQSLQLPCP-TKQPILVRISREPHTP*PAVTVRSNIRAPLHRFPCCTGMLPD 273
           +R + LQ P P T   +   + +EP T     T    I  P    P CT +L D
Sbjct: 26  LRERPLQSPAPITSTSLTSGLDKEPQTSTDNTTTNGEILNPSSSEPTCTSVLSD 79


>AF143148-1|AAD37914.1|  315|Caenorhabditis elegans R151.8B protein
           protein.
          Length = 315

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
 Frame = -2

Query: 431 IRSQSLQLPCP-TKQPILVRISREPHTP*PAVTVRSNIRAPLHRFPCCTGMLPD 273
           +R + LQ P P T   +   + +EP T     T    I  P    P CT +L D
Sbjct: 26  LRERPLQSPAPITSTSLTSGLDKEPQTSTDNTTTNGEILNPSSSEPTCTSVLSD 79


>U23147-2|AAC46688.1|  918|Caenorhabditis elegans Hypothetical
           protein C18H9.3 protein.
          Length = 918

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
 Frame = +1

Query: 535 KKENVLLQLEAAYRERLMYAYSEVKRRLDYQ--LEKSNVER-RLRPEAHGRLDSEQR 696
           KK+N ++  EAA R RL  A    +RRL+ +  + +  + R R+R E   R   E+R
Sbjct: 599 KKKNEIIAKEAADRMRLEEATERERRRLEAESRVAEEKIRRDRVRAELEAREREEER 655


>AL117201-2|CAI79268.1|  527|Caenorhabditis elegans Hypothetical
           protein Y53H1C.1b protein.
          Length = 527

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 15/47 (31%), Positives = 18/47 (38%)
 Frame = -2

Query: 167 GRAKVFWSCVATSEAEPRATSAVHAVCLLAVERKATRDNIIYRIFYM 27
           G    F SC+      PRA      +C +AV    T   I Y  F M
Sbjct: 334 GHLPTFLSCINAESNSPRAALLFQLICTIAVTFVDTESLITYVTFVM 380


>AL117201-1|CAB55063.1|  541|Caenorhabditis elegans Hypothetical
           protein Y53H1C.1a protein.
          Length = 541

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 15/47 (31%), Positives = 18/47 (38%)
 Frame = -2

Query: 167 GRAKVFWSCVATSEAEPRATSAVHAVCLLAVERKATRDNIIYRIFYM 27
           G    F SC+      PRA      +C +AV    T   I Y  F M
Sbjct: 334 GHLPTFLSCINAESNSPRAALLFQLICTIAVTFVDTESLITYVTFVM 380


>Z22964-2|CAA80537.1| 1759|Caenorhabditis elegans a2(IV) collagen
            protein.
          Length = 1759

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
 Frame = +3

Query: 528  PGQEGERAPAARGRLQGEAHV---RLLRG-EAASGLPAREVERGASSSP 662
            PG++GE  PAAR   +G+A +     LRG +  SGLP     +G +  P
Sbjct: 1021 PGEKGEAGPAARDGQKGDAGLPGQPGLRGPQGPSGLPGVPGFKGETGLP 1069


>Z22964-1|CAA80536.1| 1758|Caenorhabditis elegans a2(IV) collagen
            protein.
          Length = 1758

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
 Frame = +3

Query: 528  PGQEGERAPAARGRLQGEAHV---RLLRG-EAASGLPAREVERGASSSP 662
            PG++GE  PAAR   +G+A +     LRG +  SGLP     +G +  P
Sbjct: 1020 PGEKGEAGPAARDGQKGDAGLPGQPGLRGPQGPSGLPGVPGFKGETGLP 1068


>U53342-4|AAA96216.1| 1758|Caenorhabditis elegans Lethal protein 2,
            isoform a protein.
          Length = 1758

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
 Frame = +3

Query: 528  PGQEGERAPAARGRLQGEAHV---RLLRG-EAASGLPAREVERGASSSP 662
            PG++GE  PAAR   +G+A +     LRG +  SGLP     +G +  P
Sbjct: 1020 PGEKGEAGPAARDGQKGDAGLPGQPGLRGPQGPSGLPGVPGFKGETGLP 1068


>U53342-3|AAA96215.1| 1759|Caenorhabditis elegans Lethal protein 2,
            isoform b protein.
          Length = 1759

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
 Frame = +3

Query: 528  PGQEGERAPAARGRLQGEAHV---RLLRG-EAASGLPAREVERGASSSP 662
            PG++GE  PAAR   +G+A +     LRG +  SGLP     +G +  P
Sbjct: 1021 PGEKGEAGPAARDGQKGDAGLPGQPGLRGPQGPSGLPGVPGFKGETGLP 1069


>U22327-1|AAA64312.1| 1795|Caenorhabditis elegans alpha2(IV) collagen
            protein.
          Length = 1795

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
 Frame = +3

Query: 528  PGQEGERAPAARGRLQGEAHV---RLLRG-EAASGLPAREVERGASSSP 662
            PG++GE  PAAR   +G+A +     LRG +  SGLP     +G +  P
Sbjct: 1057 PGEKGEAGPAARDGQKGDAGLPGQPGLRGPQGPSGLPGVPGFKGETGLP 1105


>Z79755-7|CAB02103.1|  466|Caenorhabditis elegans Hypothetical
           protein F43G9.10 protein.
          Length = 466

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = +1

Query: 574 RERLMYAYSEVKRRLDYQLEKSNVERRLRPEAHGRLDSEQRD 699
           R+R +    E+KR +  +LE+ +VE     E+    DS++ D
Sbjct: 177 RDRAIKREEEIKREIKEELEEDDVEEEEEEESSEEEDSDEDD 218


>AL023845-6|CAA19536.1|  168|Caenorhabditis elegans Hypothetical
           protein Y51B9A.8 protein.
          Length = 168

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +1

Query: 268 CGSGNIPVQQGNLCNGARILLRTVTAGHGVCG 363
           C +GN  V  G+ C  A+++  T+T   G+ G
Sbjct: 36  CPAGNTEVSSGDCCPTAQVVNGTITCNGGLVG 67


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,602,871
Number of Sequences: 27780
Number of extensions: 348273
Number of successful extensions: 1293
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1293
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1735436670
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)