Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30329
         (738 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   4.0  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    21   9.1  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    21   9.1  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    21   9.1  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    21   9.1  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    21   9.1  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   9.1  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   9.1  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 12/35 (34%), Positives = 15/35 (42%)
 Frame = -3

Query: 190 LCLAHPLQGEQRFSGRVWLHRKQSPVRLVLCTLSV 86
           LCLA  +  E   +   WL    +  R   CTL V
Sbjct: 16  LCLASTILSESAGTSCKWLSEGGNDTRSADCTLRV 50


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -2

Query: 107 SAVHAVCLLAVERKATRDNIIYR 39
           S +  VC+  V RK    N++YR
Sbjct: 377 SLLEFVCVNYVGRKRPMHNVVYR 399


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -2

Query: 107 SAVHAVCLLAVERKATRDNIIYR 39
           S +  VC+  V RK    N++YR
Sbjct: 346 SLLEFVCVNYVGRKRPMHNVVYR 368


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -2

Query: 107 SAVHAVCLLAVERKATRDNIIYR 39
           S +  VC+  V RK    N++YR
Sbjct: 397 SLLEFVCVNYVGRKRPMHNVVYR 419


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -2

Query: 107 SAVHAVCLLAVERKATRDNIIYR 39
           S +  VC+  V RK    N++YR
Sbjct: 346 SLLEFVCVNYVGRKRPMHNVVYR 368


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 7/24 (29%), Positives = 15/24 (62%)
 Frame = -3

Query: 460 FHGLVPTFVPFVLSRFNFLVQPSS 389
           FH  +PT +  ++S  +F ++P +
Sbjct: 249 FHTYIPTCLIVIMSWVSFWIKPEA 272


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 8/30 (26%), Positives = 14/30 (46%)
 Frame = +1

Query: 619 DYQLEKSNVERRLRPEAHGRLDSEQRDQGD 708
           D + +   V+ R  PE+HG    +  D  +
Sbjct: 689 DQEGDDDQVDEREYPESHGHDSGQDEDMAE 718


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 6/15 (40%), Positives = 9/15 (60%)
 Frame = +3

Query: 357 MWLT*NSDQNWLLGW 401
           +W   + DQ W+L W
Sbjct: 595 LWYVPSLDQVWILNW 609


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,488
Number of Sequences: 438
Number of extensions: 4390
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23023035
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)