Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30329
         (738 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g11890.3 68417.m01892 protein kinase family protein contains ...    30   1.8  
At4g11890.2 68417.m01891 protein kinase family protein contains ...    30   1.8  
At4g11890.1 68417.m01890 protein kinase family protein contains ...    30   1.8  
At3g24120.2 68416.m03029 myb family transcription factor contain...    28   5.6  
At4g36520.1 68417.m05185 trichohyalin-related low similarity to ...    27   9.8  
At3g46580.1 68416.m05056 methyl-CpG-binding domain-containing pr...    27   9.8  
At1g42430.1 68414.m04893 expressed protein                             27   9.8  

>At4g11890.3 68417.m01892 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 354

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 19/57 (33%), Positives = 24/57 (42%)
 Frame = -2

Query: 332 RSNIRAPLHRFPCCTGMLPDPHQKCKTRHTSFRVKNWNHSSGIKPSLTLPGSPLTGR 162
           R NI   LH F C +  LPDP      R       NW  S  + P  +   SP++ R
Sbjct: 300 RPNIDKVLHWFSCFSTPLPDP--TFGNRFLVEEETNWPWSPSLSPGHSSVTSPISSR 354


>At4g11890.2 68417.m01891 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 352

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 19/57 (33%), Positives = 24/57 (42%)
 Frame = -2

Query: 332 RSNIRAPLHRFPCCTGMLPDPHQKCKTRHTSFRVKNWNHSSGIKPSLTLPGSPLTGR 162
           R NI   LH F C +  LPDP      R       NW  S  + P  +   SP++ R
Sbjct: 298 RPNIDKVLHWFSCFSTPLPDP--TFGNRFLVEEETNWPWSPSLSPGHSSVTSPISSR 352


>At4g11890.1 68417.m01890 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 351

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 19/57 (33%), Positives = 24/57 (42%)
 Frame = -2

Query: 332 RSNIRAPLHRFPCCTGMLPDPHQKCKTRHTSFRVKNWNHSSGIKPSLTLPGSPLTGR 162
           R NI   LH F C +  LPDP      R       NW  S  + P  +   SP++ R
Sbjct: 297 RPNIDKVLHWFSCFSTPLPDP--TFGNRFLVEEETNWPWSPSLSPGHSSVTSPISSR 351


>At3g24120.2 68416.m03029 myb family transcription factor contains
           Pfam profile: PF00249 myb-like DNA-binding domain
          Length = 298

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 17/31 (54%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
 Frame = +1

Query: 592 AYSEVKRRLDYQLEKSNVERR--LRPEAHGR 678
           A  EV+RRL  QLE   V+RR  LR EA G+
Sbjct: 146 AQMEVQRRLHDQLEYGQVQRRLQLRIEAQGK 176


>At4g36520.1 68417.m05185 trichohyalin-related low similarity to
           SP|Q07283 Trichohyalin {Homo sapiens}
          Length = 1400

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 16/48 (33%), Positives = 29/48 (60%)
 Frame = +1

Query: 553 LQLEAAYRERLMYAYSEVKRRLDYQLEKSNVERRLRPEAHGRLDSEQR 696
           L+ E   RER+    +E ++RL   LE+   ER+++ EA  + ++E+R
Sbjct: 643 LREENDRRERVAVEKAENEKRLKAALEQEEKERKIK-EAREKAENERR 689


>At3g46580.1 68416.m05056 methyl-CpG-binding domain-containing
           protein weak similarity to SP|P51608 Methyl-CpG-binding
           protein 2 (MeCP-2 protein) (MeCP2) {Homo sapiens};
           contains Pfam profile PF01429: Methyl-CpG binding domain
          Length = 182

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = +3

Query: 378 DQNWLLGWTRKLKRLRTNGTKVGT 449
           D NWL    R   R+RT+GTK GT
Sbjct: 31  DDNWLPPDWRTEIRVRTSGTKAGT 54


>At1g42430.1 68414.m04893 expressed protein
          Length = 435

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 15/41 (36%), Positives = 18/41 (43%)
 Frame = -2

Query: 317 APLHRFPCCTGMLPDPHQKCKTRHTSFRVKNWNHSSGIKPS 195
           AP  RF C   ML    +  K+    F  K   H +GIK S
Sbjct: 42  APTRRFTCFADMLAPIRRSEKSEERRFDQKMSAHGAGIKTS 82


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,827,185
Number of Sequences: 28952
Number of extensions: 329640
Number of successful extensions: 1082
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1053
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1082
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1624036432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)