Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30328
         (731 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     24   1.5  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    23   2.5  
AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory recept...    23   3.4  
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    22   5.9  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    22   5.9  
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    22   5.9  

>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +3

Query: 105 GIPFLTSCPDH 137
           G+PF+T CP H
Sbjct: 148 GVPFVTQCPIH 158


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = -2

Query: 730 PPHQSGSPPKQMQP 689
           PPH  G PP   QP
Sbjct: 61  PPHHYGGPPSGGQP 74


>AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory receptor
           candidate 48 protein.
          Length = 408

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +1

Query: 199 CLFCKCLKTL*FSYSV 246
           CL  +CL TL F Y +
Sbjct: 386 CLMARCLNTLIFYYHI 401


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = +3

Query: 105 GIPFLTSCP 131
           G+PF+T CP
Sbjct: 214 GVPFVTQCP 222


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = +3

Query: 105 GIPFLTSCP 131
           G+PF+T CP
Sbjct: 214 GVPFVTQCP 222


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +3

Query: 213 VFKDTLIFVFCIGIIYRVIIVLFFI 287
           +F   L+F+ CI   Y  +I+L  I
Sbjct: 274 IFTMHLLFLLCIYYFYCALIILLCI 298


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,074
Number of Sequences: 336
Number of extensions: 3427
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19571740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)