Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30328
         (731 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC191.11 |inv1||beta-fructofuranosidase|Schizosaccharomyces po...    28   1.6  
SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma...    26   6.4  
SPCC1235.15 |dga1|SPCC548.01|diacylglycerol O-acyltransferase |S...    25   8.4  
SPAC5H10.11 |gmh1||alpha-1,2-galactosyltransferase Gmh1|Schizosa...    25   8.4  

>SPCC191.11 |inv1||beta-fructofuranosidase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 581

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 16/44 (36%), Positives = 19/44 (43%)
 Frame = +3

Query: 294 PFNEKLLGSSFQFALKIYNKFSKLDSVAVTLLYVTAFTFYVNLN 425
           P N  LL     F   + N  S L    +TL   TAF F V L+
Sbjct: 407 PLNVSLLRDETLFTAPVINSSSSLSGSPITLPSNTAFEFNVTLS 450


>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 918

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
 Frame = +3

Query: 279 FFIIEPFNEKLLGSSFQFALKIYNKFSKLD--SVAVTLLYVTAF 404
           F+++ P    LL S  Q  ++ +  F KLD  S+ +T L+V +F
Sbjct: 492 FYVLLPSFYILLNSFNQKLMEYFKGFVKLDYFSIFITFLHVCSF 535


>SPCC1235.15 |dga1|SPCC548.01|diacylglycerol O-acyltransferase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 345

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +3

Query: 468 IMNTFNYDWFCQYFFL*LHR 527
           + N   Y WFC YF + LH+
Sbjct: 85  LRNAPPYRWFCHYFPIRLHK 104


>SPAC5H10.11 |gmh1||alpha-1,2-galactosyltransferase
           Gmh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 329

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -3

Query: 60  ILTDCIFSYLKYHHLRNYNF 1
           +L DC  + ++Y  L+NYNF
Sbjct: 104 LLDDCFKNRIEYAKLQNYNF 123


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,779,734
Number of Sequences: 5004
Number of extensions: 52781
Number of successful extensions: 96
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)