Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30327
         (595 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    23   2.6  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   3.4  
EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    22   4.5  
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    22   4.5  
AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        21   5.9  
AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein p...    21   7.8  
AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein p...    21   7.8  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    21   7.8  

>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 9/29 (31%), Positives = 14/29 (48%)
 Frame = +3

Query: 495 TSWNGSPNKREGPRVARFPLGGSQDGRPT 581
           T ++  P+    PR  R    G++ G PT
Sbjct: 197 TRYSDRPSSGRSPRTRRVKKPGAKQGAPT 225


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +3

Query: 63   QTKPTASTTRLYTTSASAL 119
            QTK T STT   TT+ S L
Sbjct: 1184 QTKTTTSTTTRPTTTVSQL 1202



 Score = 21.8 bits (44), Expect = 4.5
 Identities = 7/19 (36%), Positives = 10/19 (52%)
 Frame = -3

Query: 290  GAKPGMKKWRRGREPCLRP 234
            G KP    W++  +P  RP
Sbjct: 1158 GHKPSTSSWQKPTKPSYRP 1176


>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +3

Query: 66  TKPTASTTRLYTTSASALSNCP 131
           +K + STT   TT++SAL++ P
Sbjct: 4   SKFSPSTTTTTTTTSSALNSTP 25


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +3

Query: 66  TKPTASTTRLYTTSASALSNCP 131
           +K + STT   TT++SAL++ P
Sbjct: 4   SKFSPSTTTTTTTTSSALNSTP 25


>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = +3

Query: 306 KQTVPCLDCTRAHTTDV 356
           KQT  C    R HT D+
Sbjct: 299 KQTAICFKAPRYHTLDI 315


>AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein
           protein.
          Length = 287

 Score = 21.0 bits (42), Expect = 7.8
 Identities = 9/35 (25%), Positives = 13/35 (37%)
 Frame = -2

Query: 336 GYSQGTVLSASTGCEGSETWHEEVETREGTMFTAN 232
           GY QG  +         + WH        ++F AN
Sbjct: 31  GYHQGAQMGPEQQMWEPQMWHHHSHMPPHSVFAAN 65


>AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein
           protein.
          Length = 249

 Score = 21.0 bits (42), Expect = 7.8
 Identities = 9/35 (25%), Positives = 13/35 (37%)
 Frame = -2

Query: 336 GYSQGTVLSASTGCEGSETWHEEVETREGTMFTAN 232
           GY QG  +         + WH        ++F AN
Sbjct: 31  GYHQGAQMGPEQQMWEPQMWHHHSHMPPHSVFAAN 65


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 21.0 bits (42), Expect = 7.8
 Identities = 9/37 (24%), Positives = 19/37 (51%)
 Frame = +1

Query: 289 PLTSRGSRQYRALTVPELTQQMFDAKNMMAACDPRHG 399
           P ++ GS       + +L ++ FD+++   +  P HG
Sbjct: 718 PESNNGSSPSVLNAIEKLIEKSFDSRSRQNSSFPGHG 754


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,845
Number of Sequences: 336
Number of extensions: 3278
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14935063
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)