Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30323
         (781 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1734.10c |||mRNA processing protein |Schizosaccharomyces pom...    27   2.3  
SPCC1442.04c |||conserved fungal protein|Schizosaccharomyces pom...    27   3.0  
SPBC27.02c |ask1|mug181|DASH complex subunit Ask1|Schizosaccharo...    27   3.0  
SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynei...    27   4.0  
SPAC1F8.07c |||pyruvate decarboxylase |Schizosaccharomyces pombe...    26   7.0  
SPAC186.09 |||pyruvate decarboxylase |Schizosaccharomyces pombe|...    25   9.2  
SPAC30D11.10 |rad22||DNA repair protein Rad22|Schizosaccharomyce...    25   9.2  
SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|c...    25   9.2  

>SPBC1734.10c |||mRNA processing protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 332

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -3

Query: 146 WATWMACWRCSSSMPTILS 90
           W   + CW C +  PT+LS
Sbjct: 110 WMEMLDCWSCHTDYPTVLS 128


>SPCC1442.04c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 409

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = -1

Query: 754 PKRIENKGETPRFQLEQTKSQYLVE*IFPFQPVDGFE 644
           PK   NK ET R +L+Q  S+ L+E        +GFE
Sbjct: 87  PKNSVNKTETIREELDQAASKILIE-TLDLHQKEGFE 122


>SPBC27.02c |ask1|mug181|DASH complex subunit
           Ask1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 307

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +2

Query: 320 SPVPIIVLRRSPSLNELSHSHILSL 394
           SP PI +    PSLN+ + SH LSL
Sbjct: 215 SPSPISMKMDMPSLNDRNSSHALSL 239


>SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynein
           Mcp5/Num1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 968

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +2

Query: 473 IKSYFCICFVNFSNFSCGTGTHDLPW 550
           ++++FC C  N  +F CG  T  + W
Sbjct: 553 LENHFC-CLKNVKDFVCGANTISMQW 577


>SPAC1F8.07c |||pyruvate decarboxylase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 594

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = +2

Query: 326 VPIIVLRRSPSLNELSHSHIL 388
           +P+I++  SP+ N+LS  H+L
Sbjct: 98  LPVILVSGSPNTNDLSSGHLL 118


>SPAC186.09 |||pyruvate decarboxylase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 572

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 8/21 (38%), Positives = 16/21 (76%)
 Frame = +2

Query: 326 VPIIVLRRSPSLNELSHSHIL 388
           +P+I++  SP+ N++  SH+L
Sbjct: 103 LPVILISGSPNTNDIGSSHLL 123


>SPAC30D11.10 |rad22||DNA repair protein Rad22|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 469

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +1

Query: 310 DHTESRPHHRPTALPIIKRT 369
           DH++S P  R + LPIIK++
Sbjct: 375 DHSKSLPVQRASVLPIIKQS 394


>SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1316

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +3

Query: 480 PIFVYASLISRISRVALGRTIFLG 551
           P+FV  +   R  RVA G TI+LG
Sbjct: 139 PVFVELARHIRTQRVAEGNTIYLG 162


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,623,984
Number of Sequences: 5004
Number of extensions: 48455
Number of successful extensions: 147
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)