Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30323
         (781 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0383 - 8259156-8261843                                           30   2.4  
01_05_0387 - 21695277-21695351,21696186-21696228,21696325-216964...    29   4.1  
04_04_1073 - 30606472-30606515,30606897-30606988,30607152-306072...    28   7.2  
03_06_0572 + 34812203-34812278,34812485-34813768,34813973-348140...    28   7.2  
07_03_1781 + 29468919-29468951,29469057-29469184,29469349-294694...    28   9.6  

>09_02_0383 - 8259156-8261843
          Length = 895

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = +3

Query: 498 SLISRISRVALGRTIFLGHPRTQKHISIRSRLSVLESTKSWMMLSG 635
           S+I ++ RV L     +GH   + H +IR     + S K W+M +G
Sbjct: 460 SVIWQLKRVCLLEEGDIGHTEVRLHDTIRDMALWITSEKGWLMQAG 505


>01_05_0387 -
           21695277-21695351,21696186-21696228,21696325-21696454,
           21696812-21697028,21697202-21697248,21698132-21698228,
           21698637-21698687,21698788-21698919,21699345-21699499,
           21700461-21700534,21700566-21700730,21701368-21701420
          Length = 412

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 14/44 (31%), Positives = 25/44 (56%)
 Frame = +2

Query: 299 SPLRIIRSPVPIIVLRRSPSLNELSHSHILSLHNNLCNETSCDR 430
           SPL +  +P+PI +    P+  +L+  H  S+H++   E +C R
Sbjct: 31  SPLFVESTPIPISLSPYKPNSLDLNDDHDNSVHDDGGGEKTCRR 74


>04_04_1073 -
           30606472-30606515,30606897-30606988,30607152-30607243,
           30607362-30607469,30607614-30607748,30607826-30607871,
           30608320-30608420,30608512-30608649,30608721-30608819,
           30608920-30609036,30609941-30610102,30610271-30610330,
           30611120-30611216,30611238-30611296,30611364-30611480,
           30611922-30612020,30612115-30612180,30612405-30612542,
           30612659-30612742,30612820-30612892,30612937-30612992,
           30613074-30613182,30613253-30613335,30613406-30613489,
           30613679-30613750,30613827-30613904,30613984-30614067,
           30614142-30614212,30614497-30614566,30614866-30614955,
           30615046-30615177,30615250-30615350,30615634-30615691,
           30615762-30615878,30617981-30618133
          Length = 1094

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +3

Query: 531 GRTIFLGHPRTQKHISIRSRLSV-LESTKSWMMLSGSKFS 647
           G  + LG   ++ HI  +    + L+S KSW+   GSK S
Sbjct: 601 GVAVHLGGSESEVHIHWKGAAEIILDSCKSWLAADGSKHS 640


>03_06_0572 +
           34812203-34812278,34812485-34813768,34813973-34814049,
           34814299-34814646
          Length = 594

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +2

Query: 5   TNPSLLPMVTDTASLPTTGPPLLSTAYPTT 94
           TNP+  P VT+  ++P   PP      PTT
Sbjct: 331 TNPATTPAVTNPTTMPYPYPPQQGGVMPTT 360


>07_03_1781 +
           29468919-29468951,29469057-29469184,29469349-29469433,
           29469771-29469824,29470072-29470163,29470280-29470383,
           29470811-29470886,29471231-29471678,29471874-29471916,
           29471977-29472209,29472302-29472505,29472595-29472693,
           29472789-29472861,29473373-29473500,29473614-29473836,
           29473992-29474215,29474296-29474423,29475053-29475167,
           29475603-29475658,29475795-29475888,29475966-29476152,
           29476229-29476309,29476384-29476484,29476567-29476629,
           29476800-29476907
          Length = 1059

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = -2

Query: 156 LVILGDLDGLLEMLQFDADD 97
           L+ LGD +GLL +L++D DD
Sbjct: 130 LMYLGDENGLLSVLKYDVDD 149


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,704,468
Number of Sequences: 37544
Number of extensions: 291374
Number of successful extensions: 824
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 809
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 824
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2091906552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)