Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30323
         (781 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14511| Best HMM Match : Keratin_B2 (HMM E-Value=2.2)                32   0.45 
SB_52148| Best HMM Match : EGF (HMM E-Value=0)                         31   1.4  
SB_58292| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.2  
SB_54428| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.6  
SB_40737| Best HMM Match : Extensin_2 (HMM E-Value=2.2)                28   7.4  
SB_13289| Best HMM Match : DUF543 (HMM E-Value=10)                     28   7.4  

>SB_14511| Best HMM Match : Keratin_B2 (HMM E-Value=2.2)
          Length = 276

 Score = 32.3 bits (70), Expect = 0.45
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +2

Query: 308 RIIRSPVPIIVLRRSPSLNELSHSHILSLHNNLCNETSCDRIL 436
           R++ S  P++ L   P  N  S  H+ +    L N +SC R+L
Sbjct: 22  RVLLSTRPLVNLSTRPLFNASSRQHVNASSRELVNASSCQRVL 64


>SB_52148| Best HMM Match : EGF (HMM E-Value=0)
          Length = 1055

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 19/65 (29%), Positives = 28/65 (43%)
 Frame = +2

Query: 341 LRRSPSLNELSHSHILSLHNNLCNETSCDRILE*YVLY*YKFL*IKSYFCICFVNFSNFS 520
           L+ +P  +  + +H+ + H   C    C R L        K L   +Y CIC   F+   
Sbjct: 252 LQCNPDNSRHNWTHVPNCHTGTCQSNPCGRGL-------CKELTRTTYMCICKEGFTGTH 304

Query: 521 CGTGT 535
           C TGT
Sbjct: 305 CETGT 309


>SB_58292| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 127

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +2

Query: 2   PTNPSLLPMVTDTASLPTTGPPLLSTAYP 88
           P + + LP+VT T  L  T PPL++T  P
Sbjct: 63  PLDTTTLPLVTITPPLVITAPPLVTTTPP 91


>SB_54428| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 447

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = -1

Query: 733 GETPRFQLEQTKSQYLVE*IFPFQPVDGFENF-EPLNIIHDFVL 605
           G  PR  L+ T  ++    ++P+  +D FE F + L +  DF +
Sbjct: 140 GNLPRESLKYTSHRFKERRVYPYDYMDSFERFNDKLPVKEDFTM 183


>SB_40737| Best HMM Match : Extensin_2 (HMM E-Value=2.2)
          Length = 409

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = +3

Query: 348 APHH*TNSVIVISYHYITIYVMKHHVIAS*SNMYYINISFCK*NPIFVYAS 500
           +P+H T  +    YH   IY   +H+    ++ Y+I I +     I +YAS
Sbjct: 254 SPYH-TYVIYASPYHTYIIYTSTYHIYIIYASPYHIYIIYASPYHICIYAS 303


>SB_13289| Best HMM Match : DUF543 (HMM E-Value=10)
          Length = 319

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +3

Query: 354 HH*TNSVIVISYHYITIYVMKHHVIAS*SNMYY 452
           HH  +S I+I++H  +  ++ HH  +S  N YY
Sbjct: 288 HH-QSSTIIINHHQSSSIIINHHQSSSIINYYY 319


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,128,530
Number of Sequences: 59808
Number of extensions: 349401
Number of successful extensions: 1004
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 819
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 990
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2131907602
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)