Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30323
(781 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BT006863-1|AAP35509.1| 266|Homo sapiens integral membrane prote... 30 8.1
BC016148-1|AAH16148.1| 266|Homo sapiens integral membrane prote... 30 8.1
BC000554-1|AAH00554.1| 266|Homo sapiens integral membrane prote... 30 8.1
AY341247-1|AAP88930.1| 266|Homo sapiens integral membrane prote... 30 8.1
AL139322-1|CAH71156.1| 266|Homo sapiens integral membrane prote... 30 8.1
AK223190-1|BAD96910.1| 420|Homo sapiens Hypothetical protein DK... 30 8.1
AK000503-1|BAA91210.1| 266|Homo sapiens protein ( Homo sapiens ... 30 8.1
AF246221-1|AAF66130.1| 277|Homo sapiens transmembrane protein B... 30 8.1
AF152462-1|AAD45280.1| 266|Homo sapiens transmembrane protein B... 30 8.1
AF136973-1|AAG49434.1| 266|Homo sapiens putative transmembrane ... 30 8.1
AF086918-1|AAP97148.1| 266|Homo sapiens E3-16 protein. 30 8.1
>BT006863-1|AAP35509.1| 266|Homo sapiens integral membrane protein
2B protein.
Length = 266
Score = 30.3 bits (65), Expect = 8.1
Identities = 17/44 (38%), Positives = 22/44 (50%)
Frame = -1
Query: 661 PVDGFENFEPLNIIHDFVLSRTLKRDLMLICFWVLGWPRKIVRP 530
PV F + +P NI+HDF T DL L +V+ IV P
Sbjct: 133 PVPEFADSDPANIVHDFNKKLTAYLDLNLDKCYVIPLNTSIVMP 176
>BC016148-1|AAH16148.1| 266|Homo sapiens integral membrane protein
2B protein.
Length = 266
Score = 30.3 bits (65), Expect = 8.1
Identities = 17/44 (38%), Positives = 22/44 (50%)
Frame = -1
Query: 661 PVDGFENFEPLNIIHDFVLSRTLKRDLMLICFWVLGWPRKIVRP 530
PV F + +P NI+HDF T DL L +V+ IV P
Sbjct: 133 PVPEFADSDPANIVHDFNKKLTAYLDLNLDKCYVIPLNTSIVMP 176
>BC000554-1|AAH00554.1| 266|Homo sapiens integral membrane protein
2B protein.
Length = 266
Score = 30.3 bits (65), Expect = 8.1
Identities = 17/44 (38%), Positives = 22/44 (50%)
Frame = -1
Query: 661 PVDGFENFEPLNIIHDFVLSRTLKRDLMLICFWVLGWPRKIVRP 530
PV F + +P NI+HDF T DL L +V+ IV P
Sbjct: 133 PVPEFADSDPANIVHDFNKKLTAYLDLNLDKCYVIPLNTSIVMP 176
>AY341247-1|AAP88930.1| 266|Homo sapiens integral membrane protein
2B protein.
Length = 266
Score = 30.3 bits (65), Expect = 8.1
Identities = 17/44 (38%), Positives = 22/44 (50%)
Frame = -1
Query: 661 PVDGFENFEPLNIIHDFVLSRTLKRDLMLICFWVLGWPRKIVRP 530
PV F + +P NI+HDF T DL L +V+ IV P
Sbjct: 133 PVPEFADSDPANIVHDFNKKLTAYLDLNLDKCYVIPLNTSIVMP 176
>AL139322-1|CAH71156.1| 266|Homo sapiens integral membrane protein
2B protein.
Length = 266
Score = 30.3 bits (65), Expect = 8.1
Identities = 17/44 (38%), Positives = 22/44 (50%)
Frame = -1
Query: 661 PVDGFENFEPLNIIHDFVLSRTLKRDLMLICFWVLGWPRKIVRP 530
PV F + +P NI+HDF T DL L +V+ IV P
Sbjct: 133 PVPEFADSDPANIVHDFNKKLTAYLDLNLDKCYVIPLNTSIVMP 176
>AK223190-1|BAD96910.1| 420|Homo sapiens Hypothetical protein
DKFZp686P18130 variant protein.
Length = 420
Score = 30.3 bits (65), Expect = 8.1
Identities = 21/53 (39%), Positives = 25/53 (47%)
Frame = -1
Query: 637 EPLNIIHDFVLSRTLKRDLMLICFWVLGWPRKIVRPSATREIREINEAYTKIG 479
E L +HDF+L L RDLM L K+ A R EI E Y +IG
Sbjct: 77 ETLGDVHDFLLRLFLDRDLM-----TLPIQNKLAPFIAKRRTPEIQEQYRRIG 124
>AK000503-1|BAA91210.1| 266|Homo sapiens protein ( Homo sapiens
cDNA FLJ20496 fis, clone KAT08729. ).
Length = 266
Score = 30.3 bits (65), Expect = 8.1
Identities = 17/44 (38%), Positives = 22/44 (50%)
Frame = -1
Query: 661 PVDGFENFEPLNIIHDFVLSRTLKRDLMLICFWVLGWPRKIVRP 530
PV F + +P NI+HDF T DL L +V+ IV P
Sbjct: 133 PVPEFADSDPANIVHDFNKKLTAYLDLNLDKCYVIPLNTSIVMP 176
>AF246221-1|AAF66130.1| 277|Homo sapiens transmembrane protein BRI
protein.
Length = 277
Score = 30.3 bits (65), Expect = 8.1
Identities = 17/44 (38%), Positives = 22/44 (50%)
Frame = -1
Query: 661 PVDGFENFEPLNIIHDFVLSRTLKRDLMLICFWVLGWPRKIVRP 530
PV F + +P NI+HDF T DL L +V+ IV P
Sbjct: 133 PVPEFADSDPANIVHDFNKKLTAYLDLNLDKCYVIPLNTSIVMP 176
>AF152462-1|AAD45280.1| 266|Homo sapiens transmembrane protein BRI
protein.
Length = 266
Score = 30.3 bits (65), Expect = 8.1
Identities = 17/44 (38%), Positives = 22/44 (50%)
Frame = -1
Query: 661 PVDGFENFEPLNIIHDFVLSRTLKRDLMLICFWVLGWPRKIVRP 530
PV F + +P NI+HDF T DL L +V+ IV P
Sbjct: 133 PVPEFADSDPANIVHDFNKKLTAYLDLNLDKCYVIPLNTSIVMP 176
>AF136973-1|AAG49434.1| 266|Homo sapiens putative transmembrane
protein E3-16 protein.
Length = 266
Score = 30.3 bits (65), Expect = 8.1
Identities = 17/44 (38%), Positives = 22/44 (50%)
Frame = -1
Query: 661 PVDGFENFEPLNIIHDFVLSRTLKRDLMLICFWVLGWPRKIVRP 530
PV F + +P NI+HDF T DL L +V+ IV P
Sbjct: 133 PVPEFADSDPANIVHDFNKKLTAYLDLNLDKCYVIPLNTSIVMP 176
>AF086918-1|AAP97148.1| 266|Homo sapiens E3-16 protein.
Length = 266
Score = 30.3 bits (65), Expect = 8.1
Identities = 17/44 (38%), Positives = 22/44 (50%)
Frame = -1
Query: 661 PVDGFENFEPLNIIHDFVLSRTLKRDLMLICFWVLGWPRKIVRP 530
PV F + +P NI+HDF T DL L +V+ IV P
Sbjct: 133 PVPEFADSDPANIVHDFNKKLTAYLDLNLDKCYVIPLNTSIVMP 176
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 91,338,222
Number of Sequences: 237096
Number of extensions: 1666666
Number of successful extensions: 4213
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 4048
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4213
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9478778060
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -