Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30323
         (781 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY204179-1|AAO39183.1|  486|Caenorhabditis elegans nuclear recep...    29   2.8  
AF332209-1|AAK17980.1|  350|Caenorhabditis elegans nuclear recep...    29   2.8  
AF078783-3|AAN63404.1|  504|Caenorhabditis elegans Nuclear hormo...    29   2.8  
AF078783-2|AAK82901.1|  486|Caenorhabditis elegans Nuclear hormo...    29   2.8  
Z81044-5|CAE17706.2|  460|Caenorhabditis elegans Hypothetical pr...    28   6.5  

>AY204179-1|AAO39183.1|  486|Caenorhabditis elegans nuclear receptor
           NHR-80 protein.
          Length = 486

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = -1

Query: 646 ENFEPLNIIHDFVLSRTLKRDLMLICFWVLGWP 548
           E+ +PL + HDF L  T+K  +ML+  W+  WP
Sbjct: 228 EDIKPL-VFHDFRL--TIKTHIMLVYEWLQTWP 257


>AF332209-1|AAK17980.1|  350|Caenorhabditis elegans nuclear receptor
           NHR-80 protein.
          Length = 350

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = -1

Query: 646 ENFEPLNIIHDFVLSRTLKRDLMLICFWVLGWP 548
           E+ +PL + HDF L  T+K  +ML+  W+  WP
Sbjct: 92  EDIKPL-VFHDFRL--TIKTHIMLVYEWLQTWP 121


>AF078783-3|AAN63404.1|  504|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 80, isoform b protein.
          Length = 504

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = -1

Query: 646 ENFEPLNIIHDFVLSRTLKRDLMLICFWVLGWP 548
           E+ +PL + HDF L  T+K  +ML+  W+  WP
Sbjct: 246 EDIKPL-VFHDFRL--TIKTHIMLVYEWLQTWP 275


>AF078783-2|AAK82901.1|  486|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 80, isoform a protein.
          Length = 486

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = -1

Query: 646 ENFEPLNIIHDFVLSRTLKRDLMLICFWVLGWP 548
           E+ +PL + HDF L  T+K  +ML+  W+  WP
Sbjct: 228 EDIKPL-VFHDFRL--TIKTHIMLVYEWLQTWP 257


>Z81044-5|CAE17706.2|  460|Caenorhabditis elegans Hypothetical
           protein C30H6.11 protein.
          Length = 460

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +2

Query: 2   PTNPSLLPMVTDTASLPTTGPPLLSTAYPTTESSA 106
           PT  +  P  T T    TT  P  +T  PTT ++A
Sbjct: 161 PTTTTTTPTTTTTTPTTTTTTPTTTTTTPTTTTTA 195



 Score = 28.3 bits (60), Expect = 6.5
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +2

Query: 2   PTNPSLLPMVTDTASLPTTGPPLLSTAYPTTESS 103
           PT  +  P  T TA   TT  P  +T  PTT ++
Sbjct: 182 PTTTTTTPTTTTTAPTTTTTTPTTTTTTPTTTTT 215


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,279,651
Number of Sequences: 27780
Number of extensions: 266743
Number of successful extensions: 935
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 884
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 935
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1882685842
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)