Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30322
(706 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyce... 104 1e-23
SPAC607.03c |snu13||U3 snoRNP-associated protein Snu13|Schizosac... 44 2e-05
SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyce... 42 7e-05
SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa... 26 6.0
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S... 26 6.0
SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ... 25 8.0
SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit Ssr1|Schizosa... 25 8.0
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 25 8.0
>SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 259
Score = 104 bits (250), Expect = 1e-23
Identities = 46/70 (65%), Positives = 57/70 (81%)
Frame = -3
Query: 506 KNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLF 327
++F IGQ IQP RDLSRFV+WP+YIR+QR++ +L RLKVPP I QF +TLDK TA +F
Sbjct: 32 RSFGIGQDIQPKRDLSRFVKWPEYIRLQRRRKILNLRLKVPPAIAQFQKTLDKNTATQVF 91
Query: 326 KILEKYRPET 297
K+L KYRPET
Sbjct: 92 KLLNKYRPET 101
Score = 83.8 bits (198), Expect = 2e-17
Identities = 37/56 (66%), Positives = 47/56 (83%)
Frame = -1
Query: 169 EEGALVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTCLALT 2
++ LV+IA DVDPIELV+FLPALC+KMGVPY IVK K+RLG ++H+KT LA+T
Sbjct: 146 KKAKLVLIASDVDPIELVVFLPALCKKMGVPYAIVKNKARLGTVIHQKTAAVLAVT 201
Score = 26.6 bits (56), Expect = 3.5
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -2
Query: 246 KKDEPPPKRPNTIRSGTNTVTKLVEKKKAHL 154
K + K+P ++ G N V L+E KKA L
Sbjct: 120 KSAQDVSKKPYNVKYGLNHVVALIEAKKAKL 150
>SPAC607.03c |snu13||U3 snoRNP-associated protein
Snu13|Schizosaccharomyces pombe|chr 1|||Manual
Length = 125
Score = 44.0 bits (99), Expect = 2e-05
Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 3/64 (4%)
Frame = -1
Query: 226 KEAQHHPIRHKHSHQAGREEEGAL---VVIAHDVDPIELVLFLPALCRKMGVPYCIVKGK 56
++A H+ K +++A + + +V+A D +PIE++L LP LC VPY V K
Sbjct: 24 QQASHYKQLRKGANEATKTLNRGISEFIVMAADTEPIEILLHLPLLCEDKNVPYVFVPSK 83
Query: 55 SRLG 44
+ LG
Sbjct: 84 AALG 87
>SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 154
Score = 42.3 bits (95), Expect = 7e-05
Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Frame = -1
Query: 217 QHHPIRH-KHSHQAGREEEGALVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGA 41
Q H +R K +A R+ E LV++A D+ P++++ +P LC VPY K LG
Sbjct: 51 QKHILRGVKEVVKAVRKGEKGLVILAGDISPMDVISHIPVLCEDNNVPYLYTVSKELLGE 110
Query: 40 LVHRKTCT 17
+ K T
Sbjct: 111 ASNTKRPT 118
>SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit
Par2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 627
Score = 25.8 bits (54), Expect = 6.0
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = -3
Query: 416 KAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILE 315
KAVL LK P IN F + L + +F++LE
Sbjct: 463 KAVLTGILKYWPRINSFKELLFLNEIEDIFEVLE 496
>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
Tor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2337
Score = 25.8 bits (54), Expect = 6.0
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = +3
Query: 189 LCLCRIGWC 215
LCLC IGWC
Sbjct: 2326 LCLCYIGWC 2334
>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 25.4 bits (53), Expect = 8.0
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -2
Query: 432 PHPAPEGCTSASSESAPSDQPIYPDTGQDY 343
PHP SA S ++P P+ P T +DY
Sbjct: 355 PHPRVFSANSAFSTTSPP--PLTPSTSRDY 382
>SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit
Ssr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 25.4 bits (53), Expect = 8.0
Identities = 11/39 (28%), Positives = 22/39 (56%)
Frame = -3
Query: 542 QEDRESSLREEAKNFAIGQGIQPTRDLSRFVRWPKYIRI 426
+ED E +R+EAK F + Q P ++ + +W + ++
Sbjct: 30 KEDTEPEVRDEAKEFLLSQ--LPQVEVPEWAQWFDFSKV 66
>SPAC20G8.05c |cdc15||cell division control protein
Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 927
Score = 25.4 bits (53), Expect = 8.0
Identities = 13/52 (25%), Positives = 23/52 (44%)
Frame = -2
Query: 495 HWSGHSANSGLVQICKMAQVYPHPAPEGCTSASSESAPSDQPIYPDTGQDYS 340
++ + N + Q+ A YP+ + SAS S+P+ P T + S
Sbjct: 296 YFKENGLNYDIDQLISKAPSYPYSSSRPSASASLASSPTRSAFRPKTSETVS 347
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,706,235
Number of Sequences: 5004
Number of extensions: 49930
Number of successful extensions: 158
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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