Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30322
(706 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0677 - 19388888-19389019,19389124-19389216,19389317-193894... 100 2e-21
08_02_0211 - 14333553-14333684,14333795-14333887,14334019-143341... 100 2e-21
01_07_0018 - 40488702-40488833,40488928-40489020,40489125-404892... 92 3e-19
06_01_1127 + 9294079-9294193,9294300-9294369,9294611-9294716,929... 42 6e-04
02_05_0610 - 30342105-30342266,30343024-30343129,30343788-303438... 40 0.001
10_01_0125 + 1509642-1509759,1509847-1509950,1510693-1510824,151... 38 0.006
03_02_0321 + 7443835-7443837,7443957-7444077,7444168-7444271,744... 38 0.006
06_03_0392 + 20318728-20319309,20319596-20319725,20319844-203198... 31 0.89
12_01_0033 - 272848-272943,274026-274169,274264-274375,274521-27... 30 1.6
03_04_0065 + 16984736-16984835,16984932-16985369,16985511-169856... 29 2.7
11_04_0354 + 16697571-16700256,16700335-16700759 29 3.6
11_01_0035 - 256087-256185,256287-256430,256521-256632,256777-25... 29 3.6
05_01_0580 + 5210002-5210170,5210466-5210524,5210883-5211668,521... 29 3.6
04_01_0449 + 5830017-5830272,5830376-5830620,5831994-5833019 29 4.8
02_01_0423 - 3092863-3094959 29 4.8
05_03_0235 - 10747649-10748118,10748226-10748314,10748477-107485... 28 6.3
02_02_0061 + 6468190-6471046,6471318-6471736 28 6.3
>09_04_0677 -
19388888-19389019,19389124-19389216,19389317-19389445,
19389559-19389728,19390280-19390481,19390576-19390623,
19390797-19390799
Length = 258
Score = 99.5 bits (237), Expect = 2e-21
Identities = 43/69 (62%), Positives = 54/69 (78%)
Frame = -3
Query: 506 KNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLF 327
K F IG + P +DL RFV+WPK +RIQRQ+ +L++RLKVPP +NQFT+TLDK A LF
Sbjct: 30 KQFGIGGALPPKKDLHRFVKWPKVVRIQRQRRILKQRLKVPPALNQFTRTLDKNLATNLF 89
Query: 326 KILEKYRPE 300
K+L KYRPE
Sbjct: 90 KMLLKYRPE 98
Score = 92.7 bits (220), Expect = 3e-19
Identities = 41/57 (71%), Positives = 50/57 (87%)
Frame = -1
Query: 172 EEEGALVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTCLALT 2
+ + LVVIAHDVDPIELV++LPALCRKM VPYCIVKGK+RLG++VH+KT + L LT
Sbjct: 141 QSKAQLVVIAHDVDPIELVVWLPALCRKMEVPYCIVKGKARLGSIVHKKTASVLCLT 197
>08_02_0211 -
14333553-14333684,14333795-14333887,14334019-14334105,
14334220-14334389,14334985-14335186,14335604-14335606
Length = 228
Score = 99.5 bits (237), Expect = 2e-21
Identities = 43/69 (62%), Positives = 54/69 (78%)
Frame = -3
Query: 506 KNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLF 327
K F IG + P +DL RFV+WPK +RIQRQ+ +L++RLKVPP +NQFT+TLDK A LF
Sbjct: 14 KQFGIGGALPPKKDLHRFVKWPKVVRIQRQRRILKQRLKVPPALNQFTRTLDKNLATNLF 73
Query: 326 KILEKYRPE 300
K+L KYRPE
Sbjct: 74 KMLLKYRPE 82
Score = 50.8 bits (116), Expect = 1e-06
Identities = 22/31 (70%), Positives = 27/31 (87%)
Frame = -1
Query: 172 EEEGALVVIAHDVDPIELVLFLPALCRKMGV 80
+ + LVVIAHDVDPIELV++LPALCRKM +
Sbjct: 125 QSKAQLVVIAHDVDPIELVVWLPALCRKMEI 155
>01_07_0018 -
40488702-40488833,40488928-40489020,40489125-40489253,
40489379-40489500,40490292-40490544,40490636-40490638
Length = 243
Score = 92.3 bits (219), Expect = 3e-19
Identities = 40/57 (70%), Positives = 50/57 (87%)
Frame = -1
Query: 172 EEEGALVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTCLALT 2
+ + LVVIAHDVDPIELV++LPALCRKM +PYCIVKGK+RLG++VH+KT + L LT
Sbjct: 126 QSKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKARLGSIVHKKTASVLCLT 182
Score = 83.4 bits (197), Expect = 2e-16
Identities = 40/90 (44%), Positives = 56/90 (62%)
Frame = -3
Query: 569 PIGGQKG*AQEDRESSLREEAKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLK 390
P+ +K A + K F IG + P +DL RFVRWPK +RIQRQ+ VL++RLK
Sbjct: 10 PVPARKKAAAAAVNPLFEKRPKQFGIGGALPPRKDLHRFVRWPKAVRIQRQRRVLKQRLK 69
Query: 389 VPPPINQFTQTLDKTTAKGLFKILEKYRPE 300
VPP +NQFT+TLDK ++L++ + E
Sbjct: 70 VPPALNQFTRTLDKNLGCQKERLLKRAQAE 99
>06_01_1127 +
9294079-9294193,9294300-9294369,9294611-9294716,
9295665-9295805,9296377-9296475
Length = 176
Score = 41.5 bits (93), Expect = 6e-04
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Frame = -1
Query: 175 REEEGALVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRL--GALVHRKTCTCLALT 2
R + L +IA ++ PI+++ +P LC + +PY V K L R TC L LT
Sbjct: 57 RRGQKGLCIIAGNISPIDVITHVPILCEEANIPYVYVPSKEDLATAGTTKRPTCCVLVLT 116
>02_05_0610 -
30342105-30342266,30343024-30343129,30343788-30343857,
30343978-30344092
Length = 150
Score = 40.3 bits (90), Expect = 0.001
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Frame = -1
Query: 175 REEEGALVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRL--GALVHRKTCTCLALT 2
R L VIA ++ PI+++ +P LC + +PY V K L R TC L +T
Sbjct: 57 RRGNKGLCVIAGNISPIDVITHVPILCEEANIPYIYVPSKEDLATAGTTKRPTCCVLVMT 116
>10_01_0125 +
1509642-1509759,1509847-1509950,1510693-1510824,
1510936-1510962
Length = 126
Score = 38.3 bits (85), Expect = 0.006
Identities = 17/37 (45%), Positives = 22/37 (59%)
Frame = -1
Query: 154 VVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 44
VV+A D +P+E++L LP L VPY V K LG
Sbjct: 52 VVMAADAEPLEILLHLPLLAEDKNVPYVFVPSKQALG 88
>03_02_0321 +
7443835-7443837,7443957-7444077,7444168-7444271,
7445056-7445187,7445285-7445311
Length = 128
Score = 38.3 bits (85), Expect = 0.006
Identities = 17/37 (45%), Positives = 22/37 (59%)
Frame = -1
Query: 154 VVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 44
VV+A D +P+E++L LP L VPY V K LG
Sbjct: 54 VVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALG 90
>06_03_0392 +
20318728-20319309,20319596-20319725,20319844-20319895,
20319995-20320061,20320547-20320633,20322526-20322567,
20322635-20322740,20323155-20323219,20323299-20323343,
20323442-20323549,20323636-20323723,20324147-20324193,
20324355-20324363
Length = 475
Score = 31.1 bits (67), Expect = 0.89
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = -2
Query: 432 PHPAPEGCTSASSESAPSDQP 370
P PAPE +A+ E+APSD P
Sbjct: 53 PQPAPEEAPAAAEEAAPSDDP 73
>12_01_0033 -
272848-272943,274026-274169,274264-274375,274521-274702,
274781-274912,275038-276330,279841-280545,280649-280695,
280787-280865
Length = 929
Score = 30.3 bits (65), Expect = 1.6
Identities = 13/43 (30%), Positives = 24/43 (55%)
Frame = -2
Query: 216 NTIRSGTNTVTKLVEKKKAHLWSSLMMLIPLSWFSSCQRYAVK 88
N +R +TK VE + + +S + L+ L W ++C RY ++
Sbjct: 289 NKLRHANEDLTKQVEGLQMNRFSEVEELVYLRWVNACLRYELR 331
>03_04_0065 +
16984736-16984835,16984932-16985369,16985511-16985635,
16985747-16985881,16985954-16986012,16986082-16986843,
16986973-16987118,16987151-16987251
Length = 621
Score = 29.5 bits (63), Expect = 2.7
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = +2
Query: 398 DAEVQPSGAGCGYTWAILQIWTSPELAECPDQWQSSLPLLEERI 529
DAEV+ + G +L I T CP +SS P+LE+ I
Sbjct: 578 DAEVEVAATAVGVFRVVLVIITFSRSRGCPCDPRSSYPILEDEI 621
>11_04_0354 + 16697571-16700256,16700335-16700759
Length = 1036
Score = 29.1 bits (62), Expect = 3.6
Identities = 17/50 (34%), Positives = 28/50 (56%)
Frame = +3
Query: 384 GHFQTTLKYSLLALDADILGPSYKSGQVPSWLNALTNGKVLCLFSKRGFT 533
G + LK + +L L +Y +G++P+WL AL + K++ L K FT
Sbjct: 111 GDITSDLK-NCTSLQGISLKSNYLTGEIPAWLGALPSLKLIYL-QKNSFT 158
>11_01_0035 -
256087-256185,256287-256430,256521-256632,256777-256958,
257038-257169,257297-258589,259133-259837,260465-260549,
260604-260650,260810-260900,261838-262101,262195-262309,
262455-262570,262713-262847,262969-263036,263292-263411
Length = 1235
Score = 29.1 bits (62), Expect = 3.6
Identities = 13/43 (30%), Positives = 24/43 (55%)
Frame = -2
Query: 216 NTIRSGTNTVTKLVEKKKAHLWSSLMMLIPLSWFSSCQRYAVK 88
N +R +TK VE + + +S + L+ L W ++C RY ++
Sbjct: 594 NKLRHVNEDLTKQVEGLQMNRFSEVEELVYLRWVNACLRYELR 636
>05_01_0580 +
5210002-5210170,5210466-5210524,5210883-5211668,
5211898-5212737
Length = 617
Score = 29.1 bits (62), Expect = 3.6
Identities = 12/41 (29%), Positives = 23/41 (56%)
Frame = -2
Query: 210 IRSGTNTVTKLVEKKKAHLWSSLMMLIPLSWFSSCQRYAVK 88
+R + + K VE+ K +S + L+ L W ++C RY ++
Sbjct: 348 LRQENDKLAKEVEQLKTDRFSDVEELVYLKWINACLRYELR 388
>04_01_0449 + 5830017-5830272,5830376-5830620,5831994-5833019
Length = 508
Score = 28.7 bits (61), Expect = 4.8
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +3
Query: 384 GHFQTTLKYSLLALDADILGPSYKSGQVPSWLNALTNGKVLC 509
G F ++L AD+LG Y G++P ++A G LC
Sbjct: 32 GFFTDAYDLFSISLVADLLGHVYYHGELPRNIHAAVTGIALC 73
>02_01_0423 - 3092863-3094959
Length = 698
Score = 28.7 bits (61), Expect = 4.8
Identities = 10/23 (43%), Positives = 18/23 (78%)
Frame = +3
Query: 456 SGQVPSWLNALTNGKVLCLFSKR 524
SG++P WL+ LTN ++L L++ +
Sbjct: 447 SGKIPKWLSKLTNLEMLSLYNNQ 469
>05_03_0235 -
10747649-10748118,10748226-10748314,10748477-10748574,
10748934-10749046,10749107-10749200,10749557-10749589,
10749734-10749851,10750110-10750210,10751036-10751233,
10751337-10751471,10751752-10751830,10753650-10753738,
10753835-10753987,10754100-10754285
Length = 651
Score = 28.3 bits (60), Expect = 6.3
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = -1
Query: 214 HHPIRHKHSHQAGR-EEEGALVVIAHDVDPIEL 119
HH R +HSH+AGR G V+A P+ L
Sbjct: 578 HHHDRQQHSHEAGRNHHRGYGEVVAAGAAPLRL 610
>02_02_0061 + 6468190-6471046,6471318-6471736
Length = 1091
Score = 28.3 bits (60), Expect = 6.3
Identities = 16/41 (39%), Positives = 24/41 (58%)
Frame = +3
Query: 411 SLLALDADILGPSYKSGQVPSWLNALTNGKVLCLFSKRGFT 533
SL L A +LG + +G +PS++ +L N K L L + FT
Sbjct: 111 SLQNLQALVLGENRLTGSIPSFIGSLANLKFLIL-EENNFT 150
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,283,851
Number of Sequences: 37544
Number of extensions: 388624
Number of successful extensions: 1434
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1348
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1433
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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