Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30322
(706 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_16903| Best HMM Match : No HMM Matches (HMM E-Value=.) 109 2e-24
SB_55500| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=2.8e-24) 89 2e-18
SB_38307| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=1.6e-27) 43 2e-04
SB_235| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=3.9e-15) 38 0.010
SB_25302| Best HMM Match : Ribosomal_60s (HMM E-Value=0.25) 29 3.7
SB_45328| Best HMM Match : DUF1162 (HMM E-Value=6.1e-09) 29 4.9
SB_57637| Best HMM Match : SRP40_C (HMM E-Value=2.3e-08) 28 6.4
SB_32968| Best HMM Match : SRP40_C (HMM E-Value=0.013) 28 6.4
SB_21890| Best HMM Match : PDEase_I (HMM E-Value=2.5e-07) 28 6.4
SB_9575| Best HMM Match : PDEase_I (HMM E-Value=0.00012) 28 6.4
SB_39846| Best HMM Match : SIR2 (HMM E-Value=1.4013e-45) 28 8.5
SB_35585| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.5
SB_21511| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=0.74) 28 8.5
SB_19395| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.5
>SB_16903| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 263
Score = 109 bits (262), Expect = 2e-24
Identities = 47/75 (62%), Positives = 60/75 (80%)
Frame = -3
Query: 521 LREEAKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTT 342
+ + +NF IG IQP RDLSRFVRWP+Y+++QRQK++L +RLKVPP INQFTQ LD+ +
Sbjct: 32 IEKRPRNFGIGGDIQPKRDLSRFVRWPRYVKLQRQKSLLYQRLKVPPAINQFTQALDRQS 91
Query: 341 AKGLFKILEKYRPET 297
LFK+L KYRPET
Sbjct: 92 TVQLFKLLHKYRPET 106
Score = 89.4 bits (212), Expect = 2e-18
Identities = 39/56 (69%), Positives = 48/56 (85%)
Frame = -1
Query: 169 EEGALVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTCLALT 2
++ LVVIAHDVDPIE+V++LPALCRKM VPYCIVKGK+RLG +VH+K T L +T
Sbjct: 150 KKAQLVVIAHDVDPIEIVVWLPALCRKMQVPYCIVKGKARLGKVVHKKNATALCIT 205
Score = 35.5 bits (78), Expect = 0.042
Identities = 15/30 (50%), Positives = 20/30 (66%)
Frame = -2
Query: 243 KDEPPPKRPNTIRSGTNTVTKLVEKKKAHL 154
K+E P K+P ++ G N +T LVE KKA L
Sbjct: 125 KEEAPGKKPMLVKYGINHITSLVENKKAQL 154
>SB_55500| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=2.8e-24)
Length = 172
Score = 89.4 bits (212), Expect = 2e-18
Identities = 39/56 (69%), Positives = 48/56 (85%)
Frame = -1
Query: 169 EEGALVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTCLALT 2
++ LVVIAHDVDPIE+V++LPALCRKM VPYCIVKGK+RLG +VH+K T L +T
Sbjct: 59 KKAQLVVIAHDVDPIEIVVWLPALCRKMQVPYCIVKGKARLGKVVHKKNATALCIT 114
Score = 35.5 bits (78), Expect = 0.042
Identities = 15/30 (50%), Positives = 20/30 (66%)
Frame = -2
Query: 243 KDEPPPKRPNTIRSGTNTVTKLVEKKKAHL 154
K+E P K+P ++ G N +T LVE KKA L
Sbjct: 34 KEEAPGKKPMLVKYGINHITSLVENKKAQL 63
>SB_38307| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=1.6e-27)
Length = 187
Score = 43.2 bits (97), Expect = 2e-04
Identities = 17/37 (45%), Positives = 25/37 (67%)
Frame = -1
Query: 154 VVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 44
+V+A D +P+E++L LP LC VPY V+ K+ LG
Sbjct: 113 IVMAADTEPLEILLHLPLLCEDKNVPYVFVRSKAALG 149
>SB_235| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=3.9e-15)
Length = 544
Score = 37.5 bits (83), Expect = 0.010
Identities = 15/43 (34%), Positives = 25/43 (58%)
Frame = -1
Query: 184 QAGREEEGALVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGK 56
+A R+ E V++A DV PI+++ +P +C +PY V K
Sbjct: 108 KALRKGEKGFVILAGDVSPIDVISHIPVMCEDSKIPYAYVPSK 150
>SB_25302| Best HMM Match : Ribosomal_60s (HMM E-Value=0.25)
Length = 305
Score = 29.1 bits (62), Expect = 3.7
Identities = 11/40 (27%), Positives = 21/40 (52%)
Frame = -2
Query: 171 KKKAHLWSSLMMLIPLSWFSSCQRYAVKWAYHTALSRASP 52
+K + +W SL+ ++ L W + A +W + +ASP
Sbjct: 61 RKLSKMWKSLLKVVDLPWDTPAATTAPEWIMGPSFPQASP 100
>SB_45328| Best HMM Match : DUF1162 (HMM E-Value=6.1e-09)
Length = 1508
Score = 28.7 bits (61), Expect = 4.9
Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Frame = +1
Query: 10 LSMCMSCGVQVHRGGTCP*--QCSMVRPFYGITLAGREPAQW 129
L C+ C +Q H G + MVRP+ G EPA W
Sbjct: 1187 LLACLFCRLQSHEDGVTVDFSRMKMVRPYEGAIRRSFEPAMW 1228
>SB_57637| Best HMM Match : SRP40_C (HMM E-Value=2.3e-08)
Length = 654
Score = 28.3 bits (60), Expect = 6.4
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 6/49 (12%)
Frame = -2
Query: 291 SQEREAEESC*S*VAKKDEPPPKRPNT------IRSGTNTVTKLVEKKK 163
++ + EES S + +DEPP KRP + + S T VT V+K K
Sbjct: 89 TKTKAKEESSSSDSSSEDEPPAKRPKSAKVSKPVASSTPAVTASVKKDK 137
>SB_32968| Best HMM Match : SRP40_C (HMM E-Value=0.013)
Length = 440
Score = 28.3 bits (60), Expect = 6.4
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 6/49 (12%)
Frame = -2
Query: 291 SQEREAEESC*S*VAKKDEPPPKRPNT------IRSGTNTVTKLVEKKK 163
++ + EES S + +DEPP KRP + + S T VT V+K K
Sbjct: 332 TKTKAKEESSSSDSSSEDEPPAKRPKSAKVSKPVASSTPAVTASVKKDK 380
>SB_21890| Best HMM Match : PDEase_I (HMM E-Value=2.5e-07)
Length = 229
Score = 28.3 bits (60), Expect = 6.4
Identities = 18/69 (26%), Positives = 34/69 (49%)
Frame = -3
Query: 542 QEDRESSLREEAKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFT 363
QE E S+ ++AKN++ + TRD + K ++ V Q+R K P N +
Sbjct: 125 QELGEKSMDDQAKNYSNSPIKERTRDKDVAIPQKKEEPTNDERNVRQQRQKTKSPENNNS 184
Query: 362 QTLDKTTAK 336
++ + T++
Sbjct: 185 RSQSRKTSR 193
>SB_9575| Best HMM Match : PDEase_I (HMM E-Value=0.00012)
Length = 286
Score = 28.3 bits (60), Expect = 6.4
Identities = 18/69 (26%), Positives = 34/69 (49%)
Frame = -3
Query: 542 QEDRESSLREEAKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFT 363
QE E S+ ++AKN++ + TRD + K ++ V Q+R K P N +
Sbjct: 97 QELGEKSMDDQAKNYSNSPIKERTRDKDVAIPQKKEEPTNDERNVRQQRQKTKSPENNNS 156
Query: 362 QTLDKTTAK 336
++ + T++
Sbjct: 157 RSQSRKTSR 165
>SB_39846| Best HMM Match : SIR2 (HMM E-Value=1.4013e-45)
Length = 427
Score = 27.9 bits (59), Expect = 8.5
Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
Frame = -1
Query: 226 KEAQHHPIRHKHSHQAGR---EEEGALVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGK 56
K A H + H+A + + E L +++++ D V + ALC + G+P V
Sbjct: 30 KTALIHDGLSRGLHEAAKSLDKREAHLCILSNNCDEAMYVKLVEALCAEHGIPLLKVDDS 89
Query: 55 SRLG 44
+LG
Sbjct: 90 KKLG 93
>SB_35585| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 655
Score = 27.9 bits (59), Expect = 8.5
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = -2
Query: 408 TSASSESAPSDQPIYPDTG 352
T+ASSE+APS P PD G
Sbjct: 43 TAASSEAAPSSAPSMPDYG 61
>SB_21511| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=0.74)
Length = 437
Score = 27.9 bits (59), Expect = 8.5
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +3
Query: 6 RAKHVHVLRCTSAPRRDLPLT 68
R +H H+ RCTSAP P T
Sbjct: 74 RKRHFHLRRCTSAPEPSSPNT 94
>SB_19395| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 832
Score = 27.9 bits (59), Expect = 8.5
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = -3
Query: 461 SRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEK 312
SR RW Y R+ KA+LQR ++ I Q T + K +L K
Sbjct: 508 SRTFRWDPYSRMSTLKALLQRMEQLKTQIVQETCEIKKLEKLSRLVLLRK 557
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,228,445
Number of Sequences: 59808
Number of extensions: 403651
Number of successful extensions: 1245
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1245
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1853669818
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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