Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30322
(706 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal pro... 109 2e-24
AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal pro... 109 2e-24
AC084159-4|AAK39366.1| 234|Caenorhabditis elegans Hypothetical ... 108 3e-24
AC084159-5|AAM69075.1| 199|Caenorhabditis elegans Hypothetical ... 88 5e-18
Z49911-4|CAA90127.1| 128|Caenorhabditis elegans Hypothetical pr... 44 1e-04
AL023844-2|CAA19527.1| 163|Caenorhabditis elegans Hypothetical ... 38 0.005
U23486-3|AAL38955.1| 529|Caenorhabditis elegans Hypothetical pr... 28 7.5
>AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform a protein.
Length = 265
Score = 109 bits (261), Expect = 2e-24
Identities = 47/82 (57%), Positives = 63/82 (76%)
Frame = -3
Query: 542 QEDRESSLREEAKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFT 363
+E + + A+NF IGQ IQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF
Sbjct: 26 KEVKNPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFR 85
Query: 362 QTLDKTTAKGLFKILEKYRPET 297
LD +A+ FK+L+KYRPE+
Sbjct: 86 TALDSQSARQAFKLLDKYRPES 107
Score = 74.5 bits (175), Expect = 7e-14
Identities = 33/51 (64%), Positives = 41/51 (80%)
Frame = -1
Query: 157 LVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTCLAL 5
LV+IAHDV+P+E+VL LPALCRK VPY I+KGK+ LG +V RKT +AL
Sbjct: 155 LVLIAHDVNPLEIVLHLPALCRKYNVPYAIIKGKASLGTVVRRKTTAAVAL 205
Score = 41.5 bits (93), Expect = 6e-04
Identities = 18/32 (56%), Positives = 23/32 (71%)
Frame = -2
Query: 249 AKKDEPPPKRPNTIRSGTNTVTKLVEKKKAHL 154
A K E KRPNT+R G NT+T+LVE ++A L
Sbjct: 124 AGKKEEVTKRPNTVRHGVNTITRLVETRRAQL 155
>AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform c protein.
Length = 245
Score = 109 bits (261), Expect = 2e-24
Identities = 47/82 (57%), Positives = 63/82 (76%)
Frame = -3
Query: 542 QEDRESSLREEAKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFT 363
+E + + A+NF IGQ IQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF
Sbjct: 26 KEVKNPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFR 85
Query: 362 QTLDKTTAKGLFKILEKYRPET 297
LD +A+ FK+L+KYRPE+
Sbjct: 86 TALDSQSARQAFKLLDKYRPES 107
Score = 74.5 bits (175), Expect = 7e-14
Identities = 33/51 (64%), Positives = 41/51 (80%)
Frame = -1
Query: 157 LVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTCLAL 5
LV+IAHDV+P+E+VL LPALCRK VPY I+KGK+ LG +V RKT +AL
Sbjct: 135 LVLIAHDVNPLEIVLHLPALCRKYNVPYAIIKGKASLGTVVRRKTTAAVAL 185
Score = 38.7 bits (86), Expect = 0.004
Identities = 15/24 (62%), Positives = 20/24 (83%)
Frame = -2
Query: 225 KRPNTIRSGTNTVTKLVEKKKAHL 154
KRPNT+R G NT+T+LVE ++A L
Sbjct: 112 KRPNTVRHGVNTITRLVETRRAQL 135
>AC084159-4|AAK39366.1| 234|Caenorhabditis elegans Hypothetical
protein Y73B3A.18a protein.
Length = 234
Score = 108 bits (260), Expect = 3e-24
Identities = 47/82 (57%), Positives = 63/82 (76%)
Frame = -3
Query: 542 QEDRESSLREEAKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFT 363
+E + + A+NF IGQ IQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF
Sbjct: 129 KEVKNPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFR 188
Query: 362 QTLDKTTAKGLFKILEKYRPET 297
LD +A+ FK+L+KYRPE+
Sbjct: 189 TALDSHSARQAFKLLDKYRPES 210
>AC084159-5|AAM69075.1| 199|Caenorhabditis elegans Hypothetical
protein Y73B3A.18b protein.
Length = 199
Score = 88.2 bits (209), Expect = 5e-18
Identities = 38/64 (59%), Positives = 49/64 (76%)
Frame = -3
Query: 542 QEDRESSLREEAKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFT 363
+E + + A+NF IGQ IQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF
Sbjct: 129 KEVKNPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFR 188
Query: 362 QTLD 351
LD
Sbjct: 189 TALD 192
>Z49911-4|CAA90127.1| 128|Caenorhabditis elegans Hypothetical
protein M28.5 protein.
Length = 128
Score = 44.0 bits (99), Expect = 1e-04
Identities = 17/38 (44%), Positives = 26/38 (68%)
Frame = -1
Query: 157 LVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 44
++V+A D +P+E++L LP LC VPY V+ K+ LG
Sbjct: 53 IIVMAADAEPLEILLHLPLLCEDKNVPYVFVRSKAALG 90
>AL023844-2|CAA19527.1| 163|Caenorhabditis elegans Hypothetical
protein Y48A6B.3 protein.
Length = 163
Score = 38.3 bits (85), Expect = 0.005
Identities = 15/51 (29%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Frame = -1
Query: 175 REEEGALVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG-ALVHRK 26
R E + ++A +V PI++ +P +C + +PY + + +LG A+ HR+
Sbjct: 81 RRNEKGICILAGNVSPIDVYSHIPGICEEKEIPYVYIPSREQLGLAVGHRR 131
>U23486-3|AAL38955.1| 529|Caenorhabditis elegans Hypothetical
protein F07F6.4 protein.
Length = 529
Score = 27.9 bits (59), Expect = 7.5
Identities = 12/17 (70%), Positives = 14/17 (82%)
Frame = -1
Query: 382 LRSTNLPRHWTRLQLRA 332
+RSTNL +WT LQLRA
Sbjct: 65 VRSTNLDTNWTWLQLRA 81
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,419,142
Number of Sequences: 27780
Number of extensions: 295319
Number of successful extensions: 955
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 904
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 950
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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