Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30322
(706 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA) 101 4e-22
At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S ... 101 5e-22
At5g08180.1 68418.m00955 ribosomal protein L7Ae/L30e/S12e/Gadd45... 44 7e-05
At5g20160.2 68418.m02400 ribosomal protein L7Ae/L30e/S12e/Gadd45... 38 0.005
At5g20160.1 68418.m02399 ribosomal protein L7Ae/L30e/S12e/Gadd45... 38 0.005
At4g22380.1 68417.m03234 ribosomal protein L7Ae/L30e/S12e/Gadd45... 38 0.005
At4g12600.1 68417.m01986 ribosomal protein L7Ae/L30e/S12e/Gadd45... 38 0.006
At1g52080.1 68414.m05875 actin binding protein family contains P... 29 3.0
At2g34240.1 68415.m04189 hypothetical protein contains Pfam prof... 29 4.0
At3g63210.1 68416.m07101 expressed protein identical to senescen... 28 5.2
At5g07010.1 68418.m00794 sulfotransferase family protein similar... 28 6.9
At3g25690.1 68416.m03197 hydroxyproline-rich glycoprotein family... 28 6.9
At3g60410.2 68416.m06757 expressed protein 27 9.2
At3g60410.1 68416.m06756 expressed protein 27 9.2
At3g07770.1 68416.m00947 heat shock protein-related strong simil... 27 9.2
At2g39340.1 68415.m04829 SAC3/GANP family protein contains Pfam ... 27 9.2
>At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA)
Length = 257
Score = 101 bits (243), Expect = 4e-22
Identities = 45/89 (50%), Positives = 61/89 (68%)
Frame = -3
Query: 566 IGGQKG*AQEDRESSLREEAKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKV 387
+ +K A++ K F IG + P +DLSR+++WPK IR+QRQK +L++RLKV
Sbjct: 9 VAAKKKTAEKVSNPLFERRPKQFGIGGALPPKKDLSRYIKWPKSIRLQRQKRILKQRLKV 68
Query: 386 PPPINQFTQTLDKTTAKGLFKILEKYRPE 300
PP +NQFT+TLDK A LFK+L KYRPE
Sbjct: 69 PPALNQFTKTLDKNLATSLFKVLLKYRPE 97
Score = 98.3 bits (234), Expect = 4e-21
Identities = 44/57 (77%), Positives = 51/57 (89%)
Frame = -1
Query: 172 EEEGALVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTCLALT 2
+ + LVVIAHDVDPIELV++LPALCRKM VPYCIVKGKSRLGA+VH+KT +CL LT
Sbjct: 140 QNKAQLVVIAHDVDPIELVVWLPALCRKMEVPYCIVKGKSRLGAVVHQKTASCLCLT 196
Score = 27.9 bits (59), Expect = 6.9
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
Frame = -2
Query: 225 KRPNTIRSGTNTVTKLVEKKKAHLWSSLMMLIPLS---WFSS-CQRYAVKWAYHTALSRA 58
K+P ++ G N VT L+E+ KA L + P+ W + C++ V + SR
Sbjct: 122 KKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEVPYCIVKGKSRL 181
Query: 57 SPASVHLYTA 28
A VH TA
Sbjct: 182 G-AVVHQKTA 190
>At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S
RIBOSOMAL PROTEIN L7A - Oryza sativa,
SWISSPROT:RL7A_ORYSA
Length = 256
Score = 101 bits (242), Expect = 5e-22
Identities = 44/69 (63%), Positives = 55/69 (79%)
Frame = -3
Query: 506 KNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLF 327
K F IG + P +DLSR+++WPK IR+QRQK +L++RLKVPP +NQFT+TLDK A LF
Sbjct: 28 KQFGIGGALPPKKDLSRYIKWPKSIRLQRQKRILKQRLKVPPALNQFTKTLDKNLATSLF 87
Query: 326 KILEKYRPE 300
KIL KYRPE
Sbjct: 88 KILLKYRPE 96
Score = 94.3 bits (224), Expect = 7e-20
Identities = 43/57 (75%), Positives = 49/57 (85%)
Frame = -1
Query: 172 EEEGALVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTCLALT 2
+ + LVVIAHDVDPIELV++LPALCRKM VPYCIVKGKSRLGA+VH+KT L LT
Sbjct: 139 QNKAQLVVIAHDVDPIELVVWLPALCRKMEVPYCIVKGKSRLGAVVHQKTAAALCLT 195
Score = 27.9 bits (59), Expect = 6.9
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
Frame = -2
Query: 225 KRPNTIRSGTNTVTKLVEKKKAHLWSSLMMLIPLS---WFSS-CQRYAVKWAYHTALSRA 58
K+P ++ G N VT L+E+ KA L + P+ W + C++ V + SR
Sbjct: 121 KKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEVPYCIVKGKSRL 180
Query: 57 SPASVHLYTA 28
A VH TA
Sbjct: 181 G-AVVHQKTA 189
>At5g08180.1 68418.m00955 ribosomal protein L7Ae/L30e/S12e/Gadd45
family protein Similar to NHP2/L7Ae family proteins, see
SWISSPROT:P32495 and PMID:2063628.
Length = 156
Score = 44.4 bits (100), Expect = 7e-05
Identities = 22/57 (38%), Positives = 29/57 (50%)
Frame = -1
Query: 175 REEEGALVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTCLAL 5
R + L VIA ++ PI+++ LP LC + GVPY V K L K TC L
Sbjct: 63 RRGQKGLCVIAGNISPIDVITHLPILCEEAGVPYVYVPSKEDLAQAGATKRPTCCVL 119
>At5g20160.2 68418.m02400 ribosomal protein L7Ae/L30e/S12e/Gadd45
family protein Similar to NHP2/L7Ae family proteins, see
SWISSPROT:P32495 and PMID:2063628.
Length = 160
Score = 38.3 bits (85), Expect = 0.005
Identities = 17/37 (45%), Positives = 22/37 (59%)
Frame = -1
Query: 154 VVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 44
VV+A D +P+E++L LP L VPY V K LG
Sbjct: 86 VVMAADAEPLEILLHLPLLAEDKNVPYVFVPSKQALG 122
>At5g20160.1 68418.m02399 ribosomal protein L7Ae/L30e/S12e/Gadd45
family protein Similar to NHP2/L7Ae family proteins, see
SWISSPROT:P32495 and PMID:2063628.
Length = 128
Score = 38.3 bits (85), Expect = 0.005
Identities = 17/37 (45%), Positives = 22/37 (59%)
Frame = -1
Query: 154 VVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 44
VV+A D +P+E++L LP L VPY V K LG
Sbjct: 54 VVMAADAEPLEILLHLPLLAEDKNVPYVFVPSKQALG 90
>At4g22380.1 68417.m03234 ribosomal protein L7Ae/L30e/S12e/Gadd45
family protein Similar to NHP2/L7Ae family proteins, see
SWISSPROT:P32495 and PMID:2063628.
Length = 128
Score = 38.3 bits (85), Expect = 0.005
Identities = 17/37 (45%), Positives = 22/37 (59%)
Frame = -1
Query: 154 VVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 44
VV+A D +P+E++L LP L VPY V K LG
Sbjct: 54 VVMAADAEPLEILLHLPLLAEDKNVPYVFVPSKQALG 90
>At4g12600.1 68417.m01986 ribosomal protein L7Ae/L30e/S12e/Gadd45
family protein Similar to NHP2/L7Ae family proteins, see
SWISSPROT:P32495 and PMID:2063628.
Length = 128
Score = 37.9 bits (84), Expect = 0.006
Identities = 16/37 (43%), Positives = 22/37 (59%)
Frame = -1
Query: 154 VVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 44
+V+A D +P+E++L LP L VPY V K LG
Sbjct: 54 IVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALG 90
>At1g52080.1 68414.m05875 actin binding protein family contains
Prosite PS00019: Actinin-type actin-binding domain
signature 1; similar to actin binding protein
(GI:28071265) [Arabidopsis thaliana]; similar to A-type
inclusion protein (ATI) (Swiss-Prot:P16602) [Cowpox
virus]
Length = 573
Score = 29.1 bits (62), Expect = 3.0
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = -2
Query: 216 NTIRSGTNTVTKLVEKKKAHLWSSLMMLIPLSWFSSCQRYAVK 88
N +RS + K VE+ + + L L+ L W ++C RY ++
Sbjct: 329 NRLRSENEELKKDVEQLQGDRCTDLEQLVYLRWINACLRYELR 371
>At2g34240.1 68415.m04189 hypothetical protein contains Pfam
profiles PF04780: Protein of unknown function (DUF629),
PF04781: Protein of unknown function (DUF627)
Length = 712
Score = 28.7 bits (61), Expect = 4.0
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -2
Query: 510 GKELCHWSGHSANSGLVQICKMAQVYPHPAPEG 412
G+ LC H ++G V+ K + +Y H PEG
Sbjct: 457 GRLLCEEEHHFDDTGSVETFKSSGIYEHVIPEG 489
>At3g63210.1 68416.m07101 expressed protein identical to
senescence-associated protein SAG102 (GI::22331931)
[Arabidopsis thaliana] (unpublished); contains Pfam
profile PF04570: Protein of unknown function (DUF581)
Length = 263
Score = 28.3 bits (60), Expect = 5.2
Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Frame = -2
Query: 240 DEPPPKRPNTIRSGTNTVTKLVEKKKAHLWSSLMMLIPL-SWFSSCQRYAVKWAYHTALS 64
D+PPP +PNT + L K ++S MM+ P S FS ++ A + S
Sbjct: 22 DQPPPPKPNTCHCSPS----LFSSPKFRFFTSKMMMTPFDSDFSLVSPTSILEANPSIFS 77
Query: 63 RASPASVHLY 34
+P V +
Sbjct: 78 SKNPKPVSYF 87
>At5g07010.1 68418.m00794 sulfotransferase family protein similar to
steroid sulfotransferase 3 [Brassica napus] GI:3420008,
steroid sulfotransferase 1 [Brassica napus] GI:3420004;
contains Pfam profile PF00685: Sulfotransferase domain
Length = 359
Score = 27.9 bits (59), Expect = 6.9
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +1
Query: 166 LLLDQLGDCVCAGSDGVGPLWWRLI 240
+LLDQ D C G G GP W ++
Sbjct: 214 VLLDQAFDLYCRGVIGFGPFWEHML 238
>At3g25690.1 68416.m03197 hydroxyproline-rich glycoprotein family
protein Common family members: At4g18570, At4g04980,
At5g61090 [Arabidopsis thaliana]; identical to cDNA
CHUP1 for actin binding protein GI:28071264
Length = 1004
Score = 27.9 bits (59), Expect = 6.9
Identities = 14/54 (25%), Positives = 27/54 (50%)
Frame = -2
Query: 216 NTIRSGTNTVTKLVEKKKAHLWSSLMMLIPLSWFSSCQRYAVKWAYHTALSRAS 55
N ++ + K VE + + +S + L+ L W ++C RY ++ Y T + S
Sbjct: 321 NNLKHNNEDLLKQVEGLQMNRFSEVEELVYLRWVNACLRYELR-NYQTPAGKIS 373
>At3g60410.2 68416.m06757 expressed protein
Length = 324
Score = 27.5 bits (58), Expect = 9.2
Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Frame = -2
Query: 240 DEPPPKRPNTIRSGTNTVTKLVEKKKAHLWSSLMMLIPLSWFS-SCQRYAVKWAYHTALS 64
D PPP +P ++ +G T ++ +++ A SSL+ PL F S R+A+ A L
Sbjct: 16 DAPPPPQPPSVVNGIET-SRRQQQQIAAASSSLVKSHPLHNFPLSDLRWAMNHANTHRLR 74
Query: 63 RASPAS 46
+AS S
Sbjct: 75 KASSRS 80
>At3g60410.1 68416.m06756 expressed protein
Length = 324
Score = 27.5 bits (58), Expect = 9.2
Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Frame = -2
Query: 240 DEPPPKRPNTIRSGTNTVTKLVEKKKAHLWSSLMMLIPLSWFS-SCQRYAVKWAYHTALS 64
D PPP +P ++ +G T ++ +++ A SSL+ PL F S R+A+ A L
Sbjct: 16 DAPPPPQPPSVVNGIET-SRRQQQQIAAASSSLVKSHPLHNFPLSDLRWAMNHANTHRLR 74
Query: 63 RASPAS 46
+AS S
Sbjct: 75 KASSRS 80
>At3g07770.1 68416.m00947 heat shock protein-related strong
similarity to heat-shock protein [Secale cereale]
GI:556673; contains Pfam profiles PF02518: ATPase,
histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein, PF00183: Hsp90 protein
Length = 803
Score = 27.5 bits (58), Expect = 9.2
Identities = 14/30 (46%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Frame = -3
Query: 521 LREEAKNFAIGQGIQP-TRDLSRFVRWPKY 435
L++EAKNFA + IQ ++ S+FV +P Y
Sbjct: 275 LKQEAKNFADPERIQKLVKNYSQFVSFPIY 304
>At2g39340.1 68415.m04829 SAC3/GANP family protein contains Pfam
profile: PF03399 SAC3/GANP family
Length = 1006
Score = 27.5 bits (58), Expect = 9.2
Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Frame = -2
Query: 510 GKELCHWSGHSANSGLVQICKMAQV-YPHPAPEGCTSASSESAPS 379
G E W+GHS + V+ + Y HP P G + + + P+
Sbjct: 39 GSESAPWTGHSVENQAVENGNYSNSNYYHPQPTGPATGNVQEIPN 83
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,775,327
Number of Sequences: 28952
Number of extensions: 284800
Number of successful extensions: 956
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 910
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 955
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1516419560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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