Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30321
         (671 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    23   1.7  
DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory pro...    23   3.0  
EF222292-1|ABN79652.1|  354|Tribolium castaneum cardioactive pep...    22   4.0  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    21   6.9  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    21   6.9  
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    21   6.9  

>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = -3

Query: 498 SGWSREYSPFTTSPSRVSCWDL 433
           S WS   +P T     ++CW L
Sbjct: 305 STWSTVQTPTTVMSPTINCWSL 326


>DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory
           protein 6 protein.
          Length = 251

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +3

Query: 360 IMSKIMLPRSMSSHIPSRIPTPAITSPNTKP 452
           ++S   LP + S+   + + T   T P+TKP
Sbjct: 155 VISSTPLPPTTSTTTRTTLTTKFTTKPSTKP 185


>EF222292-1|ABN79652.1|  354|Tribolium castaneum cardioactive
           peptide receptor 2 protein.
          Length = 354

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 10/25 (40%), Positives = 11/25 (44%)
 Frame = -1

Query: 428 RRCGDPRRNMRTHTSREHDLRHDRS 354
           R+C D R     H   EHD R   S
Sbjct: 249 RQCDDHRDRPPRHFHEEHDTRRASS 273


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
            protein.
          Length = 1464

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 10/31 (32%), Positives = 13/31 (41%)
 Frame = +1

Query: 226  VLLFTPPPWKFFVYTCFASSPTLQPCATCSS 318
            V  F    W  F +     +  +  CATCSS
Sbjct: 909  VAAFGLDQWSSFYWNLLPIAVFILVCATCSS 939


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase CHS2
            protein.
          Length = 1464

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 10/31 (32%), Positives = 13/31 (41%)
 Frame = +1

Query: 226  VLLFTPPPWKFFVYTCFASSPTLQPCATCSS 318
            V  F    W  F +     +  +  CATCSS
Sbjct: 909  VAAFGLDQWSSFYWNLLPIAVFILVCATCSS 939


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 9/32 (28%), Positives = 15/32 (46%)
 Frame = +3

Query: 333 RFQLPSNTPIMSKIMLPRSMSSHIPSRIPTPA 428
           R  LP+N       +LP +  ++ P   P P+
Sbjct: 47  RLSLPTNPAFFHPGLLPLAWQANSPPSPPAPS 78


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,459
Number of Sequences: 336
Number of extensions: 3573
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17489640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)