Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30321
(671 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16A3.13 |meu7|aah4|alpha-amylase homolog Aah4|Schizosaccharo... 32 0.065
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa... 29 0.61
SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces po... 27 1.9
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar... 27 1.9
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po... 27 2.5
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 3.3
SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces ... 27 3.3
SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces pomb... 27 3.3
SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces... 27 3.3
SPBC2F12.11c |rep2||transcriptional activator Rep2|Schizosacchar... 27 3.3
SPBP23A10.05 |ssr4||SWI/SNF and RSC complex subunit Ssr4|Schizos... 26 5.7
SPAC12G12.11c |||DUF544 family protein|Schizosaccharomyces pombe... 25 7.5
SPAC6B12.13 |||protein phosphatase inhibitor |Schizosaccharomyce... 25 7.5
SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|ch... 25 7.5
SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces pomb... 25 9.9
SPBC16A3.14 |||mitochondrial ribosomal protein subunit S26|Schiz... 25 9.9
SPAC186.09 |||pyruvate decarboxylase |Schizosaccharomyces pombe|... 25 9.9
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 25 9.9
SPAC688.06c |slx4||structure-specific endonuclease subunit |Schi... 25 9.9
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa... 25 9.9
SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces... 25 9.9
SPBC4F6.10 |vps901|vps9a|guanyl-nucleotide exchange factor Vps90... 25 9.9
>SPBC16A3.13 |meu7|aah4|alpha-amylase homolog
Aah4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 774
Score = 32.3 bits (70), Expect = 0.065
Identities = 18/68 (26%), Positives = 27/68 (39%)
Frame = +2
Query: 299 PVQHAPVVHHAAIPIAVEHSDHVEDHAPAKYEFSYSVEDPHTGDHKSQHETRDGDVVKGE 478
P +H HH P V H+ DH P K+E S + H+ + + D ++
Sbjct: 390 PWKHEEHCHHGKFPRPVPHNGTKPDHKPWKHEEHCSCHEDHSVHERPSAKGALEDYIQTF 449
Query: 479 YSLLQPDG 502
Q DG
Sbjct: 450 VETFQIDG 457
Score = 31.5 bits (68), Expect = 0.11
Identities = 18/66 (27%), Positives = 26/66 (39%), Gaps = 1/66 (1%)
Frame = +2
Query: 200 RSPFDSTCRSYCS-RRPRGNSSYIHASPVVQHFSPVQHAPVVHHAAIPIAVEHSDHVEDH 376
++ D C+ +CS + H H P +H HH P V H+ DH
Sbjct: 162 KTHIDHKCKEHCSCHHDKFPRPVPHNGTKPDH-KPWKHEEHCHHGKFPRPVPHNGTKPDH 220
Query: 377 APAKYE 394
P K+E
Sbjct: 221 KPWKHE 226
Score = 28.7 bits (61), Expect = 0.81
Identities = 21/61 (34%), Positives = 26/61 (42%), Gaps = 11/61 (18%)
Frame = +2
Query: 299 PVQHAPVVHHAAIPIAVEHSDHVEDHAPAKYE-------FSYSVEDPHTG---DHKS-QH 445
P +H HH P V H+ DH P K+E +S PH G DHK +H
Sbjct: 307 PWKHEEHCHHGRFPRPVPHNGTKPDHKPWKHEEHCSCHHDKFSRPVPHNGTKPDHKPWKH 366
Query: 446 E 448
E
Sbjct: 367 E 367
Score = 27.9 bits (59), Expect = 1.4
Identities = 11/32 (34%), Positives = 15/32 (46%)
Frame = +2
Query: 299 PVQHAPVVHHAAIPIAVEHSDHVEDHAPAKYE 394
P +H HH P + H+ DH P K+E
Sbjct: 280 PWKHEEHCHHGKFPRPIPHNGTKPDHKPWKHE 311
>SPCC18B5.03 |wee1||dual specificity protein kinase
Wee1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 877
Score = 29.1 bits (62), Expect = 0.61
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +3
Query: 135 PSHQATAHYTPVLSHAAPVLTHAAPLIQHAGPIVHAAPV 251
P Q T+ +P SHAAP+ + P H+ P + A PV
Sbjct: 63 PRKQTTS--SPSFSHAAPLHPLSPPSFTHSQPQIQAQPV 99
>SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1010
Score = 27.5 bits (58), Expect = 1.9
Identities = 18/57 (31%), Positives = 26/57 (45%)
Frame = +2
Query: 248 RGNSSYIHASPVVQHFSPVQHAPVVHHAAIPIAVEHSDHVEDHAPAKYEFSYSVEDP 418
+ S Y+H VV+ Q P+ H P + SDH + A K F SV++P
Sbjct: 411 KNRSRYLHFWLVVEGLKESQDDPLNAHMIAPFSDIVSDHTDFTAIVKSYFE-SVDNP 466
>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1131
Score = 27.5 bits (58), Expect = 1.9
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = +2
Query: 140 SSSNGTLYPSIESCCSSTDSRSPFDSTCRSYCSRRPRGNSSYIHASPV 283
SS+ L S + SST S S +S S S+R ++S + ++PV
Sbjct: 987 SSTTSGLTSSSSTIPSSTRSESNSESASTSSASKRSSSSTSLVQSNPV 1034
>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2812
Score = 27.1 bits (57), Expect = 2.5
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = -2
Query: 322 HDWSMLHRAEVLDYWRSMYI 263
+D+S + E +DYW+S+YI
Sbjct: 549 NDYSPMLSYEAIDYWKSLYI 568
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 26.6 bits (56), Expect = 3.3
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +2
Query: 134 AFSSSNGTLYPSIESCCSSTDSRSPFDSTCRSYCS 238
+ SSS + PS+ S SST S + ST SY S
Sbjct: 177 SLSSSTSSSQPSVSSTSSSTFSSAAPTSTSSSYLS 211
>SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 390
Score = 26.6 bits (56), Expect = 3.3
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = +3
Query: 285 SNTSALCNMLQSCTTLRFQLPSNTPIMSKIMLPRSMSSHIPSR 413
S S C + S + NT +S + LPR++S+ IP++
Sbjct: 181 SGRSIDCQWMDSVALNLSRYYGNTEALSSLPLPRNLSADIPAK 223
>SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 649
Score = 26.6 bits (56), Expect = 3.3
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +3
Query: 153 AHYTPVLSHAAPVLTHAAPL 212
A +TPVL H + +L H +PL
Sbjct: 538 AEHTPVLKHTSSLLDHHSPL 557
>SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 637
Score = 26.6 bits (56), Expect = 3.3
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Frame = +3
Query: 342 LPSNTPIMSKIML--PRSMSSHIPSRIPTPAITSPN 443
+PSNT I S L P S++IP+ +PT + S N
Sbjct: 455 VPSNTTISSSPPLTSPVKTSANIPNLLPTSELDSSN 490
>SPBC2F12.11c |rep2||transcriptional activator
Rep2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 219
Score = 26.6 bits (56), Expect = 3.3
Identities = 17/70 (24%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Frame = +3
Query: 297 ALCNMLQSCTTLR-FQLPSNTPIMSKIMLPRSMSSHIPSRIPTPAITSPNTKPVMVMS*K 473
+LC+++ S +++ F + M+ LP + S P SPN +P++ +
Sbjct: 33 SLCDIVSSPSSVSSFASSDDFAFMNAYCLPIQQNHQFGS----PVAASPNQQPLVESQNR 88
Query: 474 ANTLYSSLMV 503
N Y+SL++
Sbjct: 89 RNVTYASLVI 98
>SPBP23A10.05 |ssr4||SWI/SNF and RSC complex subunit
Ssr4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 395
Score = 25.8 bits (54), Expect = 5.7
Identities = 11/38 (28%), Positives = 20/38 (52%)
Frame = +3
Query: 342 LPSNTPIMSKIMLPRSMSSHIPSRIPTPAITSPNTKPV 455
+P T + + LP S+ + S+ TP+ ++ T PV
Sbjct: 185 IPEGTALSQRETLPNMGSAQMKSQSRTPSFSNVTTSPV 222
>SPAC12G12.11c |||DUF544 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 25.4 bits (53), Expect = 7.5
Identities = 9/32 (28%), Positives = 18/32 (56%)
Frame = +2
Query: 359 DHVEDHAPAKYEFSYSVEDPHTGDHKSQHETR 454
D+V++H P E + ++ DH + ++TR
Sbjct: 2 DNVQEHDPDTQEHNNETQNHKQEDHSNSYQTR 33
>SPAC6B12.13 |||protein phosphatase inhibitor |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 104
Score = 25.4 bits (53), Expect = 7.5
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +2
Query: 185 SSTDSRSPFDSTCRSYCSR 241
S +DS S DS+C S CSR
Sbjct: 80 SDSDSDSDSDSSCSSCCSR 98
>SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 891
Score = 25.4 bits (53), Expect = 7.5
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = -3
Query: 123 ERCFGKTQHGRGPRL*H 73
+RCFGKT G P L H
Sbjct: 415 KRCFGKTNDGSNPCLYH 431
>SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1018
Score = 25.0 bits (52), Expect = 9.9
Identities = 16/65 (24%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Frame = +3
Query: 330 LRFQLPSNTPIMSKIMLPRSMSSHIPSRIPTPAITSPNTKPVMVMS*KANTL--YSSLMV 503
++ +LPS++ S S H P++ ++ P++K ++ + K+N Y SL
Sbjct: 854 MKGKLPSSSTSQSNKPFIEKASMHAPAKGRNSSMQEPSSKSPLLKTPKSNYFPGYGSLSP 913
Query: 504 PSQVE 518
+ VE
Sbjct: 914 NTSVE 918
>SPBC16A3.14 |||mitochondrial ribosomal protein subunit
S26|Schizosaccharomyces pombe|chr 2|||Manual
Length = 277
Score = 25.0 bits (52), Expect = 9.9
Identities = 7/21 (33%), Positives = 13/21 (61%)
Frame = -2
Query: 340 WNRSVVHDWSMLHRAEVLDYW 278
WN + D+ +L+R+ +D W
Sbjct: 230 WNHAYYKDYGLLNRSRYIDTW 250
>SPAC186.09 |||pyruvate decarboxylase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 572
Score = 25.0 bits (52), Expect = 9.9
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = -1
Query: 506 WNHQAGVESIRLSRHHHHGFRVG 438
W++ A VE+ H GFRVG
Sbjct: 497 WDYAAIVEAFNAGEGHAKGFRVG 519
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 25.0 bits (52), Expect = 9.9
Identities = 17/47 (36%), Positives = 20/47 (42%)
Frame = +2
Query: 110 PKHRSP*RAFSSSNGTLYPSIESCCSSTDSRSPFDSTCRSYCSRRPR 250
P+H + S G+ PS S S SRSP S R SR R
Sbjct: 113 PRHHRRSYSPRSDYGSRSPSPHSSVDSHQSRSPVRSRDRDRSSRSSR 159
>SPAC688.06c |slx4||structure-specific endonuclease subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 419
Score = 25.0 bits (52), Expect = 9.9
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +2
Query: 140 SSSNGTLYPSIESCCSSTDSRS 205
S S TL +ESC + DSRS
Sbjct: 304 SDSKATLIKIVESCLDAIDSRS 325
>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1628
Score = 25.0 bits (52), Expect = 9.9
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -1
Query: 416 DPRRNMRTHTSREHDLRHDRSVRRQLESQRGAR 318
D R++ HT RE + + RR+ ESQ+ R
Sbjct: 1440 DNLRSVSRHTRREPQQAQNLNARREHESQKSDR 1472
>SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 419
Score = 25.0 bits (52), Expect = 9.9
Identities = 15/46 (32%), Positives = 26/46 (56%)
Frame = +3
Query: 21 MFFKIAVVCSILAICQGGVIDEGHGHAVSSQSIVRHDEPSHQATAH 158
+ F +A++CS+L GGV+ GH ++ VR PS++A +
Sbjct: 92 LIFIVALICSVLIGVLGGVL--GH------RTAVRDRHPSYKAKTY 129
>SPBC4F6.10 |vps901|vps9a|guanyl-nucleotide exchange factor Vps901
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 537
Score = 25.0 bits (52), Expect = 9.9
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +2
Query: 311 APVVHHAAIPIAVEHSDHVED 373
+P + + IP++ EHSD VE+
Sbjct: 201 SPEIAKSGIPLSSEHSDDVEE 221
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,825,233
Number of Sequences: 5004
Number of extensions: 62410
Number of successful extensions: 264
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 240
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 262
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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