Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30321
(671 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0245 - 32619410-32619510,32619698-32620668,32620694-32621169 30 1.9
03_06_0572 + 34812203-34812278,34812485-34813768,34813973-348140... 29 2.6
10_08_0738 - 20212220-20212282,20212387-20212593,20212690-202128... 29 3.4
09_01_0008 - 233137-233279,233712-233827,235376-235720,236218-23... 29 3.4
04_04_0512 + 25806599-25808080 29 3.4
04_01_0471 + 6099768-6100094,6100384-6100416 29 3.4
03_01_0270 - 2085461-2086205,2086260-2086339,2086598-2086690,208... 29 3.4
04_04_0776 - 28000220-28000337,28000760-28000872,28001194-280012... 29 4.5
12_02_1265 - 27435096-27437675 28 5.9
03_05_0176 + 21546952-21547887,21548856-21548921,21549959-215508... 28 5.9
02_04_0451 + 23021139-23021269,23021366-23021498,23021594-230217... 28 5.9
09_04_0375 - 17055024-17055956,17056045-17056296 28 7.8
08_01_0397 - 3509186-3510291,3510322-3512335 28 7.8
03_02_0933 - 12505196-12505286,12505759-12505814,12508780-125088... 28 7.8
03_01_0371 + 2883418-2883967,2884097-2884176,2886283-2886339,288... 28 7.8
02_03_0167 - 15923872-15925683 28 7.8
02_03_0131 - 15576422-15577021 28 7.8
01_05_0732 + 24705826-24705990,24706074-24706505 28 7.8
>03_06_0245 - 32619410-32619510,32619698-32620668,32620694-32621169
Length = 515
Score = 29.9 bits (64), Expect = 1.9
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = -2
Query: 112 WEDTAWPWPSSITPPWQIAK 53
W+D WPSS + PW++ K
Sbjct: 227 WQDVLLLWPSSSSSPWELTK 246
>03_06_0572 +
34812203-34812278,34812485-34813768,34813973-34814049,
34814299-34814646
Length = 594
Score = 29.5 bits (63), Expect = 2.6
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +3
Query: 354 TPIMSKIMLPRSMSSHIPSRIPTPAITSPNTKP 452
TP M+ + P +M S + + TPA+T+P T P
Sbjct: 315 TPFMNPVTAP-TMPSPVTNPATTPAVTNPTTMP 346
>10_08_0738 -
20212220-20212282,20212387-20212593,20212690-20212819,
20212919-20213089,20213311-20213433,20213517-20213618,
20214123-20214880
Length = 517
Score = 29.1 bits (62), Expect = 3.4
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -2
Query: 109 EDTAWPWPSSITPPWQIAKIEQTTAIL 29
E WP P S PP ++ K EQT ++
Sbjct: 136 EAARWPPPPSFQPPIEVIKAEQTAPLI 162
>09_01_0008 -
233137-233279,233712-233827,235376-235720,236218-236292,
236508-236636,237516-237589,237836-237968,239366-239584,
239671-239756,239843-241107,241304-241640,242548-242862,
243614-243697,243776-243883,243981-244079
Length = 1175
Score = 29.1 bits (62), Expect = 3.4
Identities = 14/38 (36%), Positives = 17/38 (44%)
Frame = -3
Query: 327 WCTTGACCTGLKCWTTGEACIYEEFPRGRREQ*DRHVE 214
WC + G +C +AC E P G RE D H E
Sbjct: 379 WCDNKSKSMGARCHDD-DACSKESLPYGNREDHDGHSE 415
>04_04_0512 + 25806599-25808080
Length = 493
Score = 29.1 bits (62), Expect = 3.4
Identities = 10/47 (21%), Positives = 24/47 (51%)
Frame = +2
Query: 335 IPIAVEHSDHVEDHAPAKYEFSYSVEDPHTGDHKSQHETRDGDVVKG 475
+P V +S+ + +HA ++ P GD +++H++ + + G
Sbjct: 392 LPEYVSNSEELSNHATFNHKVEEDSSSPAAGDRENEHDSSNSATIDG 438
>04_01_0471 + 6099768-6100094,6100384-6100416
Length = 119
Score = 29.1 bits (62), Expect = 3.4
Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = +2
Query: 44 LLDFGYLPRWCYRRGPRPC-CVFPKHR 121
+L+F +LPR RRG R C V P H+
Sbjct: 67 VLNFAFLPRTSLRRGARACRIVVPHHK 93
>03_01_0270 -
2085461-2086205,2086260-2086339,2086598-2086690,
2086774-2086881,2087012-2087101,2087234-2087275,
2087516-2087587,2090848-2090985,2091074-2092624
Length = 972
Score = 29.1 bits (62), Expect = 3.4
Identities = 18/36 (50%), Positives = 20/36 (55%), Gaps = 5/36 (13%)
Frame = -1
Query: 416 DPRRNMRTHTSREH-DLRHDRSV----RRQLESQRG 324
+PR R TSR+H RHDRSV R Q S RG
Sbjct: 292 EPRSKRRRSTSRDHYQERHDRSVSPSSREQRHSYRG 327
>04_04_0776 -
28000220-28000337,28000760-28000872,28001194-28001289,
28001647-28001763,28002136-28002267,28002348-28002524,
28002660-28002837,28003270-28003373,28003922-28003996
Length = 369
Score = 28.7 bits (61), Expect = 4.5
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = +3
Query: 9 RHLNMFFKIAVVCSILAICQGGVI 80
RH+ + + A VC +A+C+GG +
Sbjct: 22 RHVQILKRSAAVCGAVAVCRGGAV 45
>12_02_1265 - 27435096-27437675
Length = 859
Score = 28.3 bits (60), Expect = 5.9
Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Frame = -1
Query: 251 HGGGVNNRTGMLNQRGCVSQYWSSMTQY-WGIMCRCLMRRLVMANDALGRHSMAVALVYN 75
HGGG + L V QY+ ++ Q WG M ++ L DA + + + L+++
Sbjct: 287 HGGGPQSNLRSLKSLRSVEQYYHTLQQMKWGPMTEHVLDNLHCKIDAF-QANQVLKLLHD 345
Query: 74 TTLA 63
T+A
Sbjct: 346 HTIA 349
>03_05_0176 +
21546952-21547887,21548856-21548921,21549959-21550877,
21551277-21551449,21551927-21552475
Length = 880
Score = 28.3 bits (60), Expect = 5.9
Identities = 26/79 (32%), Positives = 35/79 (44%), Gaps = 3/79 (3%)
Frame = +2
Query: 122 SP*RAFSSSNG---TLYPSIESCCSSTDSRSPFDSTCRSYCSRRPRGNSSYIHASPVVQH 292
SP F+ G +L S+ + C+S DS S R CS G+SS HA+ +H
Sbjct: 453 SPIPGFTGRGGAEASLRRSLAAACASMDS----SSLARILCSS---GSSSSSHATLAARH 505
Query: 293 FSPVQHAPVVHHAAIPIAV 349
F P A A + AV
Sbjct: 506 FRPALLAAAEPAALVVRAV 524
>02_04_0451 +
23021139-23021269,23021366-23021498,23021594-23021789,
23023376-23023737,23024049-23024363
Length = 378
Score = 28.3 bits (60), Expect = 5.9
Identities = 16/48 (33%), Positives = 20/48 (41%)
Frame = +2
Query: 110 PKHRSP*RAFSSSNGTLYPSIESCCSSTDSRSPFDSTCRSYCSRRPRG 253
P+ +P R FSS N L P S SR T + +PRG
Sbjct: 322 PEPLAPPRTFSSENAILPPESPGTSSLMASRGDLGDTPKGKMEDKPRG 369
>09_04_0375 - 17055024-17055956,17056045-17056296
Length = 394
Score = 27.9 bits (59), Expect = 7.8
Identities = 18/59 (30%), Positives = 22/59 (37%), Gaps = 1/59 (1%)
Frame = +2
Query: 248 RGNSSYIHASPVVQHFSPVQHAPVVHHAAIPIAVEHSDHV-EDHAPAKYEFSYSVEDPH 421
R SS ASP F H P+ HH + A H V +D A + PH
Sbjct: 115 RKTSSASTASPSPPPFFAPPHFPLFHHPGVAAAQHHHAFVGDDGVVAAHGIGMPFPQPH 173
>08_01_0397 - 3509186-3510291,3510322-3512335
Length = 1039
Score = 27.9 bits (59), Expect = 7.8
Identities = 18/54 (33%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Frame = -1
Query: 470 SRHHHHGFRVGTCDRRCGDPRRNMRTHTSREHDLRHDRSVR-RQLESQRGARLE 312
SRHHH R DR RR+ RE +R R ++ E +R R E
Sbjct: 39 SRHHHREDRDDDRDRDRDRERRHREKERDREERKAREREEREKEKERERARRRE 92
>03_02_0933 -
12505196-12505286,12505759-12505814,12508780-12508873,
12508949-12509079,12509187-12509290,12509585-12509680,
12510752-12510860,12511252-12511296
Length = 241
Score = 27.9 bits (59), Expect = 7.8
Identities = 17/57 (29%), Positives = 25/57 (43%)
Frame = +2
Query: 206 PFDSTCRSYCSRRPRGNSSYIHASPVVQHFSPVQHAPVVHHAAIPIAVEHSDHVEDH 376
P S +YCS S Y H V + V P H + P++ E+ H+ED+
Sbjct: 10 PAGSGKSTYCS------SLYQHCETVGRTIHMVNLDPAAEHFSYPVSTENHRHLEDN 60
>03_01_0371 + 2883418-2883967,2884097-2884176,2886283-2886339,
2887152-2887207,2888006-2888079,2889511-2889798,
2890043-2890120,2890359-2890882,2891315-2891438,
2891619-2891767,2891983-2892137,2892477-2892682,
2892768-2892901,2892983-2893284,2893514-2893617,
2893858-2893928
Length = 983
Score = 27.9 bits (59), Expect = 7.8
Identities = 35/142 (24%), Positives = 61/142 (42%), Gaps = 4/142 (2%)
Frame = +3
Query: 78 IDEGHGHAVSSQSIVRHDEPS---HQATAHYTPVLSHAAPVLTHAAPLIQHAGPIVHAAP 248
I+ GHGH++ + ++ R +E S AT + ++ LT + P + V A
Sbjct: 698 IEVGHGHSLPNLALRRGEEHSFILKPATMSFRDRRTNNDAPLTLSLPKMNGTATNVSLAK 757
Query: 249 V-EILRIYMLRQ*SNTSALCNMLQSCTTLRFQLPSNTPIMSKIMLPRSMSSHIPSRIPTP 425
V E + M + S CN +S + + S +M+ S+SS + R P
Sbjct: 758 VGETIGSLMDQYAVLVSYRCNYTESKLFFKQATSWRPCVASDLMI--SVSSELSLRNPIS 815
Query: 426 AITSPNTKPVMVMS*KANTLYS 491
+ P PV V++ +A + S
Sbjct: 816 SARVPQL-PVQVLTLEATNMTS 836
>02_03_0167 - 15923872-15925683
Length = 603
Score = 27.9 bits (59), Expect = 7.8
Identities = 15/41 (36%), Positives = 26/41 (63%)
Frame = -2
Query: 427 AGVGILDGI*ELILRGSMIFDMIGVFDGNWNRSVVHDWSML 305
AG+ +L+ + +++RGS + +FDG N+SVV W+ L
Sbjct: 187 AGLPVLNSVLTMLVRGSHLDAARLLFDGICNKSVV-TWTAL 226
>02_03_0131 - 15576422-15577021
Length = 199
Score = 27.9 bits (59), Expect = 7.8
Identities = 17/43 (39%), Positives = 19/43 (44%)
Frame = -1
Query: 446 RVGTCDRRCGDPRRNMRTHTSREHDLRHDRSVRRQLESQRGAR 318
R G DR PR R H R+ D DR R E +RG R
Sbjct: 20 RDGERDRELDRPRD--RDHRDRDRDKERDRDRDRDRERRRGER 60
>01_05_0732 + 24705826-24705990,24706074-24706505
Length = 198
Score = 27.9 bits (59), Expect = 7.8
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +1
Query: 232 LFTPPPWKFFVYTCFASSPTLQPCATCSSRAPRCDSN 342
+FT P F + TC A + + A +SR RC+ N
Sbjct: 94 VFTGPILGFLLTTCAADADDHEAAARVASRYTRCEEN 130
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,870,858
Number of Sequences: 37544
Number of extensions: 473523
Number of successful extensions: 1787
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1708
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1785
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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