Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30321
(671 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_13207| Best HMM Match : Extensin_2 (HMM E-Value=0.061) 37 0.013
SB_57270| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.017
SB_13206| Best HMM Match : Extensin_2 (HMM E-Value=0.031) 36 0.030
SB_19560| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.28
SB_7305| Best HMM Match : Extensin_2 (HMM E-Value=0.043) 32 0.37
SB_18393| Best HMM Match : RCSD (HMM E-Value=2.6) 32 0.48
SB_31500| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.64
SB_18255| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.64
SB_42160| Best HMM Match : RVT_1 (HMM E-Value=0) 31 1.1
SB_48450| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_52135| Best HMM Match : RCSD (HMM E-Value=4.8) 30 1.5
SB_58551| Best HMM Match : GLTT (HMM E-Value=5.7e-23) 30 1.5
SB_34294| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.0
SB_4910| Best HMM Match : HECT (HMM E-Value=5.8e-33) 30 2.0
SB_13937| Best HMM Match : zf-CCCH (HMM E-Value=0.0017) 30 2.0
SB_55417| Best HMM Match : Kelch_2 (HMM E-Value=4.8e-23) 29 2.6
SB_40630| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_19618| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.0
SB_25525| Best HMM Match : ABC1 (HMM E-Value=1.19993e-41) 28 6.0
SB_18731| Best HMM Match : DUF1309 (HMM E-Value=2) 28 6.0
SB_14918| Best HMM Match : Extensin_2 (HMM E-Value=0.35) 28 6.0
SB_50965| Best HMM Match : HEAT (HMM E-Value=1.2e-12) 28 7.9
SB_41288| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
SB_35669| Best HMM Match : CCT (HMM E-Value=9.1) 28 7.9
SB_11603| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
SB_4416| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
SB_58339| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
SB_46011| Best HMM Match : DNA_ligase_ZBD (HMM E-Value=2.9) 28 7.9
SB_36300| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
SB_33718| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
SB_20140| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
SB_4465| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
>SB_13207| Best HMM Match : Extensin_2 (HMM E-Value=0.061)
Length = 2735
Score = 37.1 bits (82), Expect = 0.013
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = +3
Query: 165 PVLSHAAPVLTHAAPLIQHAGPIVHAAPVEILRIY 269
PV+ H AP++ H P++ H P+V AP+ + +Y
Sbjct: 463 PVVYHQAPLVVHKPPIVYHRPPVVMPAPIYHMPVY 497
Score = 32.7 bits (71), Expect = 0.28
Identities = 15/52 (28%), Positives = 24/52 (46%)
Frame = +3
Query: 102 VSSQSIVRHDEPSHQATAHYTPVLSHAAPVLTHAAPLIQHAGPIVHAAPVEI 257
V+ I+ H P H ++ H AP+L H P++ H P+V P +
Sbjct: 21 VNRPPIIYHPPPE---VYHRPEIVVHRAPILIHRPPIVYHQPPVVVHRPAVV 69
Score = 31.5 bits (68), Expect = 0.64
Identities = 14/52 (26%), Positives = 24/52 (46%)
Frame = +3
Query: 102 VSSQSIVRHDEPSHQATAHYTPVLSHAAPVLTHAAPLIQHAGPIVHAAPVEI 257
V+ I+ H P H ++ H AP++ H P+I H P++ P +
Sbjct: 1517 VNRPPIIYHPPPE---VYHRPDIVVHRAPIVLHRPPIIYHQPPVIVHRPAVV 1565
Score = 30.7 bits (66), Expect = 1.1
Identities = 17/47 (36%), Positives = 25/47 (53%)
Frame = +3
Query: 102 VSSQSIVRHDEPSHQATAHYTPVLSHAAPVLTHAAPLIQHAGPIVHA 242
V SIV H +PS H P++ H PV+ H P + H P++H+
Sbjct: 725 VHRPSIVYH-QPS--VVVHRPPIIYHQPPVMFHQPPPLVHQ-PVLHS 767
Score = 30.7 bits (66), Expect = 1.1
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Frame = +3
Query: 123 RHDEPSHQA--TAHYTPVLSHAAPVLTHAAPLIQHAGPIVHAAP 248
R D H+A H P++ H PV+ H ++ H PIV P
Sbjct: 1533 RPDIVVHRAPIVLHRPPIIYHQPPVIVHRPAVVYHQPPIVFHQP 1576
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +3
Query: 156 HYTPVLSHAAPVLTHAAPLIQHAGPIV-HAAPVEILR 263
H P + H ++ H AP++ H PI+ H PV + R
Sbjct: 1525 HPPPEVYHRPDIVVHRAPIVLHRPPIIYHQPPVIVHR 1561
Score = 29.5 bits (63), Expect = 2.6
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +3
Query: 156 HYTPVLSHAAPVLTHAAPLIQHAGPIVHAAP 248
H P++ H PV+ H ++ H PIV P
Sbjct: 50 HRPPIVYHQPPVVVHRPAVVYHQPPIVFHQP 80
Score = 29.1 bits (62), Expect = 3.4
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +3
Query: 168 VLSHAAPVLTHAAPLIQHAGPIVHAAPVEIL 260
V+ PV+ H APL+ H PIV+ P ++
Sbjct: 457 VIVQRPPVVYHQAPLVVHKPPIVYHRPPVVM 487
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Frame = +3
Query: 123 RHDEPSHQA--TAHYTPVLSHAAPVLTHAAPLIQHAGPIVHAAPVEILR 263
R D HQ H V+ H V+ H P++ H P+V P ++R
Sbjct: 554 RPDVVVHQPDYVIHRPSVVYHQPSVVVHRPPIVYHQPPVVFHQPPPMVR 602
Score = 28.3 bits (60), Expect = 6.0
Identities = 10/31 (32%), Positives = 16/31 (51%)
Frame = +3
Query: 156 HYTPVLSHAAPVLTHAAPLIQHAGPIVHAAP 248
H ++ H A V+ H P++ H P+V P
Sbjct: 268 HQPSIVYHQASVVIHRPPIVYHQPPVVFHQP 298
Score = 28.3 bits (60), Expect = 6.0
Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Frame = +3
Query: 156 HYTPVLSHAAPVLTHAAPLIQHAGPIVHAAPVEIL--RIY 269
H ++ H V+ H P+I H+ P+V P ++ R+Y
Sbjct: 1084 HQPSIVYHQPSVVVHRPPIIYHSPPVVFHQPSPMVNQRVY 1123
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Frame = +3
Query: 117 IVRHDEPSHQATAHYTPVLSHAAPVLTHAAPLIQHAGPI-VHAAPVEILR 263
I +HD+ V+ + P++ H P + H I VH AP+ I R
Sbjct: 2 IDKHDKKKRSPETKKKDVVVNRPPIIYHPPPEVYHRPEIVVHRAPILIHR 51
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = +3
Query: 156 HYTPVLSHAAPVLTHAAPLIQHAGP-IVHAAP 248
H V+ H APV+ H ++ H P +VH P
Sbjct: 1384 HRPSVVLHQAPVVVHRPAVVYHQPPVVVHQPP 1415
>SB_57270| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 427
Score = 36.7 bits (81), Expect = 0.017
Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 5/75 (6%)
Frame = +2
Query: 230 YCSRRPRGNSSYIHASPVVQHFSP--VQHAP-VVHHAAIPIAVEHSDHVEDHAPAKYEFS 400
Y + + ++++I S +SP VQH+P V H+ P V+HS + H+P + S
Sbjct: 17 YSTAHIQYSTAHIQYSTAHTQYSPYTVQHSPYTVQHS--PYTVQHSSYTVQHSPYTVQHS 74
Query: 401 -YSVE-DPHTGDHKS 439
Y+V+ P+T H S
Sbjct: 75 PYTVQHSPYTAQHSS 89
Score = 36.7 bits (81), Expect = 0.017
Identities = 25/60 (41%), Positives = 35/60 (58%), Gaps = 5/60 (8%)
Frame = +2
Query: 269 HASPVVQHFSP--VQHAP-VVHHAAIPIAVEHSDHVEDHAPAKYEFS-YSVE-DPHTGDH 433
H+S VQH SP VQH+P V H+ P V+HS + H+P + S Y+V+ P+T H
Sbjct: 87 HSSCTVQH-SPYTVQHSPYTVQHS--PCTVQHSPYTVQHSPCTVQHSPYTVQHSPYTVQH 143
Score = 36.3 bits (80), Expect = 0.022
Identities = 25/60 (41%), Positives = 35/60 (58%), Gaps = 5/60 (8%)
Frame = +2
Query: 269 HASPVVQHFSP--VQHAP-VVHHAAIPIAVEHSDHVEDHAPAKYEFS-YSVE-DPHTGDH 433
H+S VQH SP VQH+P V H+ P V+HS + H+P + S Y+V+ P+T H
Sbjct: 229 HSSYTVQH-SPYTVQHSPYTVQHS--PYTVQHSSYTVQHSPYTVQHSPYTVQHSPYTVQH 285
Score = 35.5 bits (78), Expect = 0.039
Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 4/82 (4%)
Frame = +2
Query: 206 PFDSTC-RSYCSRRPRGNSSYIHASPVVQHFSPVQHAP-VVHHAAIPIAVEHSDHVEDHA 379
P ST R + + R ++++I SP VQH+P V H+ P V+HS + H+
Sbjct: 185 PIYSTAHRQHSTVHTRNSTAHIQHSPYT-----VQHSPYTVQHS--PYTVQHSSYTVQHS 237
Query: 380 PAKYEFS-YSVE-DPHTGDHKS 439
P + S Y+V+ P+T H S
Sbjct: 238 PYTVQHSPYTVQHSPYTVQHSS 259
Score = 34.3 bits (75), Expect = 0.091
Identities = 24/60 (40%), Positives = 34/60 (56%), Gaps = 5/60 (8%)
Frame = +2
Query: 269 HASPVVQHFSP--VQHAP-VVHHAAIPIAVEHSDHVEDHAPAKYEFS-YSVE-DPHTGDH 433
H+ VQH SP VQH+P V H+ P V+HS + H+P + S Y+V+ P+T H
Sbjct: 320 HSPYTVQH-SPYTVQHSPYTVQHS--PYTVQHSQYTVQHSPYTVQHSPYTVQHSPYTVQH 376
Score = 32.3 bits (70), Expect = 0.37
Identities = 23/64 (35%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
Frame = +2
Query: 269 HASPVVQHFSP--VQHAP-VVHHAAIPIAVEHSDHVEDHAPAKYEFSYSVEDPHTGDHKS 439
H+ VQH SP VQH+P V H+ P V+HS + + +F YS P
Sbjct: 136 HSPYTVQH-SPYAVQHSPYTVQHS--PYTVQHSPYTAQPIYSTAQFIYSTAQPIYSTAHR 192
Query: 440 QHET 451
QH T
Sbjct: 193 QHST 196
Score = 29.5 bits (63), Expect = 2.6
Identities = 26/72 (36%), Positives = 37/72 (51%), Gaps = 12/72 (16%)
Frame = +2
Query: 254 NSSYI--HASPVVQHFSP--VQHAP-VVHHAAI-----PIAVEHSDHVEDHAPAKYEFS- 400
+SSY H+ VQH SP VQH+P H++ P V+HS + H+P + S
Sbjct: 59 HSSYTVQHSPYTVQH-SPYTVQHSPYTAQHSSCTVQHSPYTVQHSPYTVQHSPCTVQHSP 117
Query: 401 YSVE-DPHTGDH 433
Y+V+ P T H
Sbjct: 118 YTVQHSPCTVQH 129
>SB_13206| Best HMM Match : Extensin_2 (HMM E-Value=0.031)
Length = 1099
Score = 35.9 bits (79), Expect = 0.030
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = +3
Query: 135 PSHQATAHYTPVLSHAAPVLTHAAPLIQHAGP-IVHAAPVEILR 263
PSH H P++ H P++ H PLI H P +VH P+ I R
Sbjct: 953 PSH--LIHRPPIILHRPPLIVHRHPLIFHRPPLLVHRMPIIIRR 994
Score = 33.5 bits (73), Expect = 0.16
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = +2
Query: 266 IHASPVVQHFSP-VQHAP-VVHHAAIPIAVEHSDHVEDHAP 382
IH P++ H P + H P +VHH + + HS HV H P
Sbjct: 1020 IHRMPILIHHHPWLIHRPAIVHHYGPNLMISHSHHVIHHYP 1060
Score = 32.7 bits (71), Expect = 0.28
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +3
Query: 156 HYTPVLSHAAPVLTHAAPLIQHAGPIVHAAP 248
H ++ H AP++ H AP+I H P+V P
Sbjct: 316 HRPDIVVHRAPIMIHRAPIIYHQPPVVVHRP 346
Score = 32.7 bits (71), Expect = 0.28
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
Frame = +3
Query: 81 DEGHGHAVSSQSIVRHDEPS--HQA--TAHYTPVLSHAAPVLTHAAPLIQHAGPIVHAAP 248
D+ + + I+ H P H+ H P++ H AP++ H P+I H IV+ P
Sbjct: 453 DKKNNVIIKRPPIIYHPPPEIFHRPDIVVHRAPLMVHRAPIIYHQPPVIVHRPAIVYHQP 512
Score = 32.3 bits (70), Expect = 0.37
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +3
Query: 156 HYTPVLSHAAPVLTHAAPLIQHAGPIVHAAP 248
H P++ H AP++ H P++ H IV+ P
Sbjct: 323 HRAPIMIHRAPIIYHQPPVVVHRPAIVYHQP 353
Score = 31.5 bits (68), Expect = 0.64
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +3
Query: 156 HYTPVLSHAAPVLTHAAPLIQHAGPIV-HAAPVEILR 263
H P + H ++ H APL+ H PI+ H PV + R
Sbjct: 468 HPPPEIFHRPDIVVHRAPLMVHRAPIIYHQPPVIVHR 504
Score = 30.7 bits (66), Expect = 1.1
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +3
Query: 156 HYTPVLSHAAPVLTHAAPLIQHAGPIV-HAAPVEILR 263
H P + H ++ H AP++ H PI+ H PV + R
Sbjct: 309 HPPPEIYHRPDIVVHRAPIMIHRAPIIYHQPPVVVHR 345
Score = 30.3 bits (65), Expect = 1.5
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = +3
Query: 114 SIVRHDEPSHQATAHYTPVLSHAAPVLTHAAPLIQHAGPIV-HAAPVEILR 263
S+V H P H P + H ++ H AP++ + PI+ H PV + R
Sbjct: 673 SVVIHRPP---IIYHPPPEIYHRPDIIVHRAPIVLYRAPIIYHQPPVVVHR 720
Score = 30.3 bits (65), Expect = 1.5
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +3
Query: 156 HYTPVLSHAAPVLTHAAPLIQHAGPIVHAAP 248
H ++ H AP++ + AP+I H P+V P
Sbjct: 691 HRPDIIVHRAPIVLYRAPIIYHQPPVVVHRP 721
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 4/55 (7%)
Frame = +3
Query: 96 HAVSSQSIVRHDEP----SHQATAHYTPVLSHAAPVLTHAAPLIQHAGPIVHAAP 248
H + I+ H P H H P+L H P++ PL+ H P++ P
Sbjct: 955 HLIHRPPIILHRPPLIVHRHPLIFHRPPLLVHRMPIIIRRPPLLIHRMPLIVHRP 1009
Score = 29.9 bits (64), Expect = 2.0
Identities = 10/31 (32%), Positives = 16/31 (51%)
Frame = +3
Query: 156 HYTPVLSHAAPVLTHAAPLIQHAGPIVHAAP 248
H P++ H PV+ H ++ H PI+ P
Sbjct: 173 HRPPIIYHQPPVIVHRPAVVYHQPPIIFHQP 203
Score = 29.9 bits (64), Expect = 2.0
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = +3
Query: 156 HYTPVLSHAAPVLTHAAPLIQHAGPIVHAAPVEILR 263
H P++ H PV+ H ++ H IV P ++R
Sbjct: 330 HRAPIIYHQPPVVVHRPAIVYHQPSIVFHQPPPVVR 365
Score = 29.5 bits (63), Expect = 2.6
Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
Frame = +3
Query: 102 VSSQSIVRHDEPS--HQA--TAHYTPVLSHAAPVLTHAAPLIQHAGPIVHAAP 248
V+ I+ H P H+ H P++ H P++ H P+I H +V+ P
Sbjct: 144 VNRPPIIYHPPPEIYHRPDIVVHRPPLVIHRPPIIYHQPPVIVHRPAVVYHQP 196
Score = 29.1 bits (62), Expect = 3.4
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = +3
Query: 156 HYTPVLSHAAPVLTHAAPLIQHAGPIV-HAAPVEILR 263
H P + H ++ H PL+ H PI+ H PV + R
Sbjct: 152 HPPPEIYHRPDIVVHRPPLVIHRPPIIYHQPPVIVHR 188
Score = 29.1 bits (62), Expect = 3.4
Identities = 12/49 (24%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Frame = +3
Query: 108 SQSIVRHDEPSHQATAHYTPVLSHAAPVLTHAAPLIQHAGPI-VHAAPV 251
++S E + P++ H P + H ++ H PI +H AP+
Sbjct: 286 TKSKTEKGEKKNSVVIRRPPIIYHPPPEIYHRPDIVVHRAPIMIHRAPI 334
Score = 29.1 bits (62), Expect = 3.4
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +3
Query: 156 HYTPVLSHAAPVLTHAAPLIQHAGPI-VHAAPVEILRIYML 275
H P++ P+L H PLI H + VH P+ I R+ +L
Sbjct: 986 HRMPIIIRRPPLLIHRMPLIVHRPDLMVHRPPLIIHRMPIL 1026
Score = 28.7 bits (61), Expect = 4.5
Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Frame = +3
Query: 156 HYTPVLSHAAPVLTHAAPLIQHAGP-IVHAAPV 251
H P+L H L H P+I H P IVH P+
Sbjct: 944 HRPPILFHPPSHLIHRPPIILHRPPLIVHRHPL 976
Score = 28.3 bits (60), Expect = 6.0
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +3
Query: 156 HYTPVLSHAAPVLTHAAPLIQHAGPIVH 239
H P++ H P+L H P + H IVH
Sbjct: 1014 HRPPLIIHRMPILIHHHPWLIHRPAIVH 1041
>SB_19560| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 132
Score = 32.7 bits (71), Expect = 0.28
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +3
Query: 156 HYTPVLSHAAPVLTHAAPLIQHAGPIVHAAPVEILRIYMLRQ*SN 290
H P L H P+L H P++ H P++ I ++Y + Q N
Sbjct: 80 HTRPTLGHTRPMLGHTRPMLGHTHPLLGHTCRLIAKVYSVGQNCN 124
>SB_7305| Best HMM Match : Extensin_2 (HMM E-Value=0.043)
Length = 908
Score = 32.3 bits (70), Expect = 0.37
Identities = 24/100 (24%), Positives = 47/100 (47%), Gaps = 2/100 (2%)
Frame = +3
Query: 96 HAVSSQSIVRHDEPSHQATAHYTPVLSHAAPVLTHAAPLIQHAGPIVHAAPVEILRIYML 275
H + + +R+ PS+ T + P+ P T ++H + ++ P L + +
Sbjct: 755 HTLKYLTTLRYSGPSN--TPLHFPIPDPRKPRYTSLFRTLEHLTTLRYSTPSNTLLYFAI 812
Query: 276 R--Q*SNTSALCNMLQSCTTLRFQLPSNTPIMSKIMLPRS 389
+ + ++L + L+ TTLR+ PSNT + I PR+
Sbjct: 813 PHPRTPHYTSLFHTLEHLTTLRYSGPSNTSLHFAIPHPRT 852
Score = 28.7 bits (61), Expect = 4.5
Identities = 14/63 (22%), Positives = 28/63 (44%)
Frame = +2
Query: 263 YIHASPVVQHFSPVQHAPVVHHAAIPIAVEHSDHVEDHAPAKYEFSYSVEDPHTGDHKSQ 442
Y S + HF+ + H + H+ ++ ++H P+K +++ DP T + S
Sbjct: 695 YFGPSNTLLHFA-IPHPQIPHYTSLFRTLKHPTTFPYSGPSKTSLHFAISDPRTPYYTSL 753
Query: 443 HET 451
T
Sbjct: 754 FHT 756
Score = 28.3 bits (60), Expect = 6.0
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = +3
Query: 294 SALCNMLQSCTTLRFQLPSNTPIMSKIMLPR 386
++L + L+ TTLR+ PSNTP+ I PR
Sbjct: 751 TSLFHTLKYLTTLRYSGPSNTPLHFPIPDPR 781
>SB_18393| Best HMM Match : RCSD (HMM E-Value=2.6)
Length = 249
Score = 31.9 bits (69), Expect = 0.48
Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Frame = +3
Query: 156 HY-TPVLSHAAPVLTHAAPLIQHAGPIVH 239
HY TP+ H P L H PL QH P+ H
Sbjct: 62 HYKTPLRHHKTPYLQHKTPLRQHKTPLRH 90
Score = 31.1 bits (67), Expect = 0.84
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = +3
Query: 123 RHDEPSHQATAHYTPVLSHAAPVLTHAAPLIQHAGPI-VHAAPV 251
+H P Q H TP+ H P+ H PL QH P+ H P+
Sbjct: 153 QHKTPLRQ---HKTPLRQHKTPLRQHKTPLRQHKTPLRQHKTPL 193
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Frame = +3
Query: 156 HYTPVLSHAAPVLTHAAPLIQHAGPI-VHAAPV 251
H TP+ H P+ H PL QH P+ H P+
Sbjct: 147 HKTPLRQHKTPLRQHKTPLRQHKTPLRQHKTPL 179
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = +3
Query: 123 RHDEPSHQATAHYTPVLSHAAPVLTHAAPLIQHAGPI-VHAAPV 251
+H P Q H TP+ H P+ + PL QH P+ H P+
Sbjct: 118 QHKTPLRQ---HKTPLRQHKTPLRQYKTPLRQHKTPLRQHKTPL 158
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = +3
Query: 123 RHDEPSHQATAHYTPVLSHAAPVLTHAAPLIQHAGPI-VHAAPV 251
+H P Q + TP+ H P+ H PL QH P+ H P+
Sbjct: 132 QHKTPLRQ---YKTPLRQHKTPLRQHKTPLRQHKTPLRQHKTPL 172
Score = 27.9 bits (59), Expect = 7.9
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = +3
Query: 123 RHDEPSHQATAHYTPVLSHAAPVLTHAAPLIQH 221
+H P Q H TP+ H P+ H PL QH
Sbjct: 167 QHKTPLRQ---HKTPLRQHKTPLRQHKTPLRQH 196
>SB_31500| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1446
Score = 31.5 bits (68), Expect = 0.64
Identities = 29/115 (25%), Positives = 47/115 (40%), Gaps = 4/115 (3%)
Frame = +3
Query: 105 SSQSIVRHDEPSHQATA-HYTPVLSHAAPVLTHAAP---LIQHAGPIVHAAPVEILRIYM 272
SS + + H P+H ATA T L H + + +P + H P + +
Sbjct: 969 SSTASLAHTSPAHLATASQITHPLPHRTISIPYPSPPHTTSSQSSQATHTPPPRAVDLPH 1028
Query: 273 LRQ*SNTSALCNMLQSCTTLRFQLPSNTPIMSKIMLPRSMSSHIPSRIPTPAITS 437
++SAL + + L + +NT I S+ P S +S PS T T+
Sbjct: 1029 PSSPHSSSALYSSPSRTSNLPYTTYTNTAISSQPSPPYSSTSPHPSHFSTRVSTN 1083
>SB_18255| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1457
Score = 31.5 bits (68), Expect = 0.64
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = +2
Query: 275 SPVVQHFSPVQHAPVVHHAAIPIAVEHSDHVEDHAPAKYEFSYSVEDP 418
SPV +H +H+ V H+++ EHS V +H+P FS S P
Sbjct: 1302 SPVSEHSRVSEHSSVSEHSSVS---EHSP-VSEHSPVSEHFSVSEHSP 1345
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Frame = +2
Query: 275 SPVVQHFSPVQHAPVVHHAAIPIAVEHSDH--VEDHAP 382
SPV +HFS +H+PV + + S+H V +H+P
Sbjct: 1332 SPVSEHFSVSEHSPVSKQSPVSEQSPVSEHSPVSEHSP 1369
>SB_42160| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 1858
Score = 30.7 bits (66), Expect = 1.1
Identities = 41/161 (25%), Positives = 62/161 (38%), Gaps = 12/161 (7%)
Frame = +2
Query: 59 YLPRWCYRRGPRPCCVFPKHRSP*---RAFSSSNGTLYPSIESCCSSTDSRSPFDSTCRS 229
Y P R + V PK R+ R+FS+ L+ S+ +TD S F S+ ++
Sbjct: 389 YTPSRSLRSANKNLLVIPKSRTKTYGDRSFSNFAAKLWNSLPLHIRNTDCLSKFKSSLKT 448
Query: 230 Y--------CSRRPRGNSSYIHASPVVQHFSPVQHAPVVHHAAIPIAVEH-SDHVEDHAP 382
Y + RPR N A P + P A ++ P E+ SD D
Sbjct: 449 YLFSSDVVAANPRPRTNGQIPIACPQRRRKDP---AVLLDRLDPPNVPEYWSDSTNDE-- 503
Query: 383 AKYEFSYSVEDPHTGDHKSQHETRDGDVVKGEYSLLQPDGS 505
+F + + PH GD K + V+ + P GS
Sbjct: 504 ---DFDVTNKRPHGGDLKEAMARKIAAKVRSIVGAVAPSGS 541
>SB_48450| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 457
Score = 30.7 bits (66), Expect = 1.1
Identities = 12/42 (28%), Positives = 21/42 (50%)
Frame = +3
Query: 96 HAVSSQSIVRHDEPSHQATAHYTPVLSHAAPVLTHAAPLIQH 221
H +S IVRH + S H+ + H + H++ +I+H
Sbjct: 31 HHQTSSDIVRHHQTSSDIIRHHQTFIRHHQTFIRHSSDIIRH 72
>SB_52135| Best HMM Match : RCSD (HMM E-Value=4.8)
Length = 476
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Frame = +2
Query: 269 HASPVVQHFSPV-QHA-PVVHHAAIPIAVEHSDHVEDHA 379
H+ P+ H P+ H+ P+ H+ P+ +HSDHV DH+
Sbjct: 435 HSDPLTDHSDPLTDHSDPLTDHSD-PLT-DHSDHVTDHS 471
>SB_58551| Best HMM Match : GLTT (HMM E-Value=5.7e-23)
Length = 272
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/22 (59%), Positives = 14/22 (63%)
Frame = -3
Query: 342 IGIAAWCTTGACCTGLKCWTTG 277
IG CTTG C TG+ WTTG
Sbjct: 97 IGTTGICTTGICTTGI--WTTG 116
>SB_34294| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 223
Score = 29.9 bits (64), Expect = 2.0
Identities = 13/30 (43%), Positives = 13/30 (43%)
Frame = +3
Query: 141 HQATAHYTPVLSHAAPVLTHAAPLIQHAGP 230
H H TP HA P HA P HA P
Sbjct: 38 HPYKNHATPYKDHATPYKDHATPYKDHATP 67
>SB_4910| Best HMM Match : HECT (HMM E-Value=5.8e-33)
Length = 958
Score = 29.9 bits (64), Expect = 2.0
Identities = 23/100 (23%), Positives = 46/100 (46%), Gaps = 2/100 (2%)
Frame = +3
Query: 96 HAVSSQSIVRHDEPSHQATAHYTPVLSHAAPVLTHAAPLIQHAGPIVHAAPVEILRIYML 275
H + + +R+ PS+ T + P+ P T ++H + ++ P + +
Sbjct: 704 HTLKYLTTLRYSGPSN--TPLHFPIPDPRKPRYTSLFRTLEHLTTLRYSTPSNTSLHFAI 761
Query: 276 R--Q*SNTSALCNMLQSCTTLRFQLPSNTPIMSKIMLPRS 389
+ + ++L + L+ TTLR+ PSNT + I PR+
Sbjct: 762 PHPRTPHYTSLFHTLEHLTTLRYSTPSNTLLYFAIPHPRT 801
Score = 29.1 bits (62), Expect = 3.4
Identities = 22/100 (22%), Positives = 45/100 (45%), Gaps = 2/100 (2%)
Frame = +3
Query: 96 HAVSSQSIVRHDEPSHQATAHYTPVLSHAAPVLTHAAPLIQHAGPIVHAAPVEILRIYML 275
H + + +R+ PS+ T + + P T ++H + ++ P + +
Sbjct: 844 HTLEHLTTLRYSTPSN--TLLHFAIPDPRTPYYTSLFHTLEHLTTLRYSGPSNTSLHFAI 901
Query: 276 R--Q*SNTSALCNMLQSCTTLRFQLPSNTPIMSKIMLPRS 389
+ + ++L + L+ TTLR+ PSNT + I PR+
Sbjct: 902 PHPRTPHYTSLFHTLEHLTTLRYSTPSNTSLHFAIPHPRT 941
Score = 28.7 bits (61), Expect = 4.5
Identities = 14/63 (22%), Positives = 28/63 (44%)
Frame = +2
Query: 263 YIHASPVVQHFSPVQHAPVVHHAAIPIAVEHSDHVEDHAPAKYEFSYSVEDPHTGDHKSQ 442
Y S + HF+ + H + H+ ++ ++H P+K +++ DP T + S
Sbjct: 644 YFGPSNTLLHFA-IPHPQIPHYTSLFRTLKHPTTFPYSGPSKTSLHFAISDPRTPYYTSL 702
Query: 443 HET 451
T
Sbjct: 703 FHT 705
Score = 28.3 bits (60), Expect = 6.0
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = +3
Query: 294 SALCNMLQSCTTLRFQLPSNTPIMSKIMLPR 386
++L + L+ TTLR+ PSNTP+ I PR
Sbjct: 700 TSLFHTLKYLTTLRYSGPSNTPLHFPIPDPR 730
Score = 28.3 bits (60), Expect = 6.0
Identities = 22/92 (23%), Positives = 43/92 (46%), Gaps = 2/92 (2%)
Frame = +3
Query: 120 VRHDEPSHQATAHYTPVLSHAAPVLTHAAPLIQHAGPIVHAAPVEILRIYMLR--Q*SNT 293
+R+ PS+ T+ + + P T ++H + ++ P L + + + +
Sbjct: 747 LRYSTPSN--TSLHFAIPHPRTPHYTSLFHTLEHLTTLRYSTPSNTLLYFAIPHPRTPHY 804
Query: 294 SALCNMLQSCTTLRFQLPSNTPIMSKIMLPRS 389
++L L+ TTLR+ PSNT + I PR+
Sbjct: 805 TSLFRTLKYLTTLRYSTPSNTSLHFAIPHPRT 836
>SB_13937| Best HMM Match : zf-CCCH (HMM E-Value=0.0017)
Length = 1495
Score = 29.9 bits (64), Expect = 2.0
Identities = 22/58 (37%), Positives = 26/58 (44%)
Frame = -1
Query: 338 ESQRGARLEHVAQG*SVGLLAKHVYTKNFHGGGVNNRTGMLNQRGCVSQYWSSMTQYW 165
+SQ GA VAQG +VGL A Y N GV+ M Q Q + TQ W
Sbjct: 189 QSQGGASTAPVAQGGAVGLPANEQYQGNVTQQGVS----MQQQYQWQQQPYQQQTQQW 242
>SB_55417| Best HMM Match : Kelch_2 (HMM E-Value=4.8e-23)
Length = 1153
Score = 29.5 bits (63), Expect = 2.6
Identities = 18/44 (40%), Positives = 24/44 (54%)
Frame = +3
Query: 324 TTLRFQLPSNTPIMSKIMLPRSMSSHIPSRIPTPAITSPNTKPV 455
+TL L S TP + + PR++ S +PS PT T P KPV
Sbjct: 804 STLIATLQSPTPQTTTVATPRTVISALPS--PTVVPTVPPAKPV 845
>SB_40630| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2174
Score = 29.1 bits (62), Expect = 3.4
Identities = 16/50 (32%), Positives = 28/50 (56%)
Frame = -1
Query: 407 RNMRTHTSREHDLRHDRSVRRQLESQRGARLEHVAQG*SVGLLAKHVYTK 258
R R H ++ R++R+ +RQL AR+E +QG +GL + +T+
Sbjct: 1486 RGRRCH--EDNSRRYERAAQRQLNLDNTARVEQTSQG-QLGLRREEEHTR 1532
>SB_19618| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 530
Score = 28.3 bits (60), Expect = 6.0
Identities = 9/33 (27%), Positives = 20/33 (60%)
Frame = -1
Query: 668 SESRGKMDYWTEMSCGDGVDSRSQRWRCSVCVR 570
++ R K+ YW +CG+ D+ +++ +C +R
Sbjct: 224 AKGRDKLIYWPVSNCGNSRDNIAKKLKCDTLMR 256
>SB_25525| Best HMM Match : ABC1 (HMM E-Value=1.19993e-41)
Length = 1008
Score = 28.3 bits (60), Expect = 6.0
Identities = 21/78 (26%), Positives = 32/78 (41%)
Frame = +3
Query: 186 PVLTHAAPLIQHAGPIVHAAPVEILRIYMLRQ*SNTSALCNMLQSCTTLRFQLPSNTPIM 365
P H A L+ A I +PV + + R S + A C SC + L S P +
Sbjct: 930 PCHVHQASLLSRAPSI---SPVTCTKHLLSRAPSISPATCIKHLSCHVHQASLLSRAPSI 986
Query: 366 SKIMLPRSMSSHIPSRIP 419
S + + +S H+ P
Sbjct: 987 SPVTCTKHLSCHVHQASP 1004
>SB_18731| Best HMM Match : DUF1309 (HMM E-Value=2)
Length = 356
Score = 28.3 bits (60), Expect = 6.0
Identities = 14/47 (29%), Positives = 21/47 (44%)
Frame = +3
Query: 117 IVRHDEPSHQATAHYTPVLSHAAPVLTHAAPLIQHAGPIVHAAPVEI 257
I+ H P H ++ H AP++ H +I H P+V P I
Sbjct: 157 IIYHPPPE---VYHRPDIVVHRAPIMLHRPAIIYHQPPVVVHRPAII 200
Score = 27.9 bits (59), Expect = 7.9
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = +3
Query: 156 HYTPVLSHAAPVLTHAAPLIQHAGPIVHAAPVEIL 260
H ++ H PV+ H +I H PIV P ++
Sbjct: 181 HRPAIIYHQPPVVVHRPAIIYHQPPIVFHQPPPVV 215
>SB_14918| Best HMM Match : Extensin_2 (HMM E-Value=0.35)
Length = 1242
Score = 28.3 bits (60), Expect = 6.0
Identities = 18/70 (25%), Positives = 30/70 (42%), Gaps = 3/70 (4%)
Frame = +2
Query: 245 PRGNSSYIHASPVV--QHFSPVQHA-PVVHHAAIPIAVEHSDHVEDHAPAKYEFSYSVED 415
P+ SY H+ V+ H A P H+ + + H+D+ P + +V
Sbjct: 177 PQATPSYGHSGSVLTLSHADNGPKATPPYGHSGSVLTLPHADNGPKATPPHGHTALTVTS 236
Query: 416 PHTGDHKSQH 445
PH DHK+ +
Sbjct: 237 PHRMDHKTPY 246
>SB_50965| Best HMM Match : HEAT (HMM E-Value=1.2e-12)
Length = 492
Score = 27.9 bits (59), Expect = 7.9
Identities = 21/106 (19%), Positives = 44/106 (41%)
Frame = +2
Query: 161 YPSIESCCSSTDSRSPFDSTCRSYCSRRPRGNSSYIHASPVVQHFSPVQHAPVVHHAAIP 340
+ +++ C + + D+ R P+ + HASP ++ + + + ++ I
Sbjct: 165 FGALQKICEDSAEQLDSDALNRPLNVLIPKFLQFFRHASPKIRLVPILVNG--MRYSEID 222
Query: 341 IAVEHSDHVEDHAPAKYEFSYSVEDPHTGDHKSQHETRDGDVVKGE 478
+ + +D+ +D A E + H QHE DG+ GE
Sbjct: 223 LILLKADNEDDEAVPDSEQDIKPRFHKSKTHSQQHEDGDGESDDGE 268
>SB_41288| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 133
Score = 27.9 bits (59), Expect = 7.9
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = +3
Query: 105 SSQSIVRHDEPSHQATAHYTPVLSHAAPVLTHAAPLIQH 221
+++ +V PSH +A YTP S AP L H
Sbjct: 37 TTRGLVEEPGPSHSRSADYTPDHSEQAPASASRKKLSDH 75
>SB_35669| Best HMM Match : CCT (HMM E-Value=9.1)
Length = 101
Score = 27.9 bits (59), Expect = 7.9
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = +3
Query: 105 SSQSIVRHDEPSHQATAHYTPVLSHAAPVLTHAAPLIQH 221
+++ +V PSH +A YTP S AP L H
Sbjct: 37 TTRGLVEEPGPSHSRSADYTPDHSEQAPASASRKKLSDH 75
>SB_11603| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 635
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/46 (26%), Positives = 23/46 (50%)
Frame = -1
Query: 170 YWGIMCRCLMRRLVMANDALGRHSMAVALVYNTTLANSQNRADYSN 33
Y G+MC + + +D+ RH M + L+ ++ ++R D N
Sbjct: 165 YIGVMCDRCSHKAIRKSDSKNRHDMELPLLLPPCNSSKRSRHDSEN 210
>SB_4416| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 503
Score = 27.9 bits (59), Expect = 7.9
Identities = 11/27 (40%), Positives = 19/27 (70%)
Frame = +3
Query: 39 VVCSILAICQGGVIDEGHGHAVSSQSI 119
+V ++ I +GGV+D HG A+ S++I
Sbjct: 158 LVMAMETIGEGGVVDNSHGKALDSKNI 184
>SB_58339| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 356
Score = 27.9 bits (59), Expect = 7.9
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = +3
Query: 105 SSQSIVRHDEPSHQATAHYTPVLSHAAPVLTHAAPLIQH 221
+++ +V PSH +A YTP S AP L H
Sbjct: 37 TTRGLVEEPGPSHSRSADYTPDHSEQAPASASRKKLSDH 75
>SB_46011| Best HMM Match : DNA_ligase_ZBD (HMM E-Value=2.9)
Length = 373
Score = 27.9 bits (59), Expect = 7.9
Identities = 34/135 (25%), Positives = 50/135 (37%)
Frame = +3
Query: 45 CSILAICQGGVIDEGHGHAVSSQSIVRHDEPSHQATAHYTPVLSHAAPVLTHAAPLIQHA 224
C L I G+ + H +S + HD Q T HY P L P +T L +H
Sbjct: 93 CPTLLIKTPGITAQ---HCLSKHPALLHDIDC-QNTRHYCPTLLIKTPGITAQYCLSKHP 148
Query: 225 GPIVHAAPVEILRIYMLRQ*SNTSALCNMLQSCTTLRFQLPSNTPIMSKIMLPRSMSSHI 404
+ + A YM + + L N+ +C R P+ I +S H
Sbjct: 149 ALLPNIACQNTRHYYMTLLVKHAALLPNI--ACQNTRRYCPTLLMKTPGITAQHCLSKH- 205
Query: 405 PSRIPTPAITSPNTK 449
P +P I NT+
Sbjct: 206 PVLLPN--IACQNTR 218
>SB_36300| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 125
Score = 27.9 bits (59), Expect = 7.9
Identities = 11/47 (23%), Positives = 26/47 (55%)
Frame = -1
Query: 440 GTCDRRCGDPRRNMRTHTSREHDLRHDRSVRRQLESQRGARLEHVAQ 300
G CDR+ + ++R + + HD+ +++ + + GAR E +++
Sbjct: 29 GACDRKAATIKSHIRQYVNEGHDVVTAANLQEAILADGGARGEGISE 75
>SB_33718| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 586
Score = 27.9 bits (59), Expect = 7.9
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = +3
Query: 105 SSQSIVRHDEPSHQATAHYTPVLSHAAPVLTHAAPLIQH 221
+++ +V PSH +A YTP S AP L H
Sbjct: 37 TTRGLVEEPGPSHSRSADYTPDHSEQAPASASRKKLSDH 75
>SB_20140| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 433
Score = 27.9 bits (59), Expect = 7.9
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = +3
Query: 105 SSQSIVRHDEPSHQATAHYTPVLSHAAPVLTHAAPLIQH 221
+++ +V PSH +A YTP S AP L H
Sbjct: 37 TTRGLVEEPGPSHSRSADYTPDHSEQAPASASRKKLSDH 75
>SB_4465| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 133
Score = 27.9 bits (59), Expect = 7.9
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = +3
Query: 105 SSQSIVRHDEPSHQATAHYTPVLSHAAPVLTHAAPLIQH 221
+++ +V PSH +A YTP S AP L H
Sbjct: 37 TTRGLVEEPGPSHSRSADYTPDHSEQAPASASRKKLSDH 75
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,432,782
Number of Sequences: 59808
Number of extensions: 537150
Number of successful extensions: 3897
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 3391
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3851
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1721264831
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -