Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30321
(671 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g36150.1 68414.m04494 protease inhibitor/seed storage/lipid t... 36 0.025
At5g41100.2 68418.m04997 expressed protein 31 0.70
At5g41100.1 68418.m04996 expressed protein 31 0.70
At1g49490.1 68414.m05547 leucine-rich repeat family protein / ex... 31 0.92
At4g37450.1 68417.m05301 arabinogalactan-protein (AGP18) identic... 29 2.1
At1g70640.1 68414.m08143 octicosapeptide/Phox/Bem1p (PB1) domain... 29 2.1
At3g53140.1 68416.m05856 O-diphenol-O-methyl transferase, putati... 29 3.7
At1g19270.1 68414.m02397 ubiquitin interaction motif-containing ... 29 3.7
At1g30420.1 68414.m03718 ATP-binding cassette transport protein,... 28 4.9
At5g31873.1 68418.m03777 hypothetical protein 28 6.5
At5g28120.1 68418.m03396 hypothetical protein 28 6.5
At5g28110.1 68418.m03395 hypothetical protein 28 6.5
At3g30816.1 68416.m03949 hypothetical protein 28 6.5
At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit... 27 8.6
At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit... 27 8.6
At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit... 27 8.6
At2g25450.1 68415.m03048 2-oxoglutarate-dependent dioxygenase, p... 27 8.6
At1g30410.1 68414.m03717 ATP-binding cassette transport protein,... 27 8.6
>At1g36150.1 68414.m04494 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein low similarity to
glucoamylase S1/S2 [Precursor] from Saccharomyces
cerevisiae [SP|P08640], proteophosphoglycan from
Leishmania major [GI:5420387]; contains Pfam protease
inhibitor/seed storage/LTP family domain PF00234
Length = 256
Score = 35.9 bits (79), Expect = 0.025
Identities = 16/46 (34%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Frame = +3
Query: 120 VRHDEPSHQATAHYTPVLSHAAPVLTHAAPLIQHAGPIVHA-APVE 254
VRH P +H +P +SH++P + ++P + H+ P+V A +PV+
Sbjct: 165 VRHSSPP---VSHSSPPVSHSSPPTSRSSPAVSHSSPVVAASSPVK 207
>At5g41100.2 68418.m04997 expressed protein
Length = 582
Score = 31.1 bits (67), Expect = 0.70
Identities = 33/131 (25%), Positives = 56/131 (42%)
Frame = +3
Query: 120 VRHDEPSHQATAHYTPVLSHAAPVLTHAAPLIQHAGPIVHAAPVEILRIYMLRQ*SNTSA 299
+R PS A TPV S ++P+ T H+ + H++P+E ++ SN
Sbjct: 346 MRQMTPSANAYILPTPVDSKSSPIFTKPVTQTNHSANLWHSSPLEPIKTAHKDAESN--- 402
Query: 300 LCNMLQSCTTLRFQLPSNTPIMSKIMLPRSMSSHIPSRIPTPAITSPNTKPVMVMS*KAN 479
L + L + F P P +++ +P ++ + S P I SP P + S + N
Sbjct: 403 LYSRLPRPSEHAFSGPLK-PSSTRLPVPVAVQAQSSS----PRI-SPTASPPLASSPRIN 456
Query: 480 TLYSSLMVPSQ 512
L+ P Q
Sbjct: 457 ELHELPRPPGQ 467
>At5g41100.1 68418.m04996 expressed protein
Length = 586
Score = 31.1 bits (67), Expect = 0.70
Identities = 33/131 (25%), Positives = 56/131 (42%)
Frame = +3
Query: 120 VRHDEPSHQATAHYTPVLSHAAPVLTHAAPLIQHAGPIVHAAPVEILRIYMLRQ*SNTSA 299
+R PS A TPV S ++P+ T H+ + H++P+E ++ SN
Sbjct: 346 MRQMTPSANAYILPTPVDSKSSPIFTKPVTQTNHSANLWHSSPLEPIKTAHKDAESN--- 402
Query: 300 LCNMLQSCTTLRFQLPSNTPIMSKIMLPRSMSSHIPSRIPTPAITSPNTKPVMVMS*KAN 479
L + L + F P P +++ +P ++ + S P I SP P + S + N
Sbjct: 403 LYSRLPRPSEHAFSGPLK-PSSTRLPVPVAVQAQSSS----PRI-SPTASPPLASSPRIN 456
Query: 480 TLYSSLMVPSQ 512
L+ P Q
Sbjct: 457 ELHELPRPPGQ 467
>At1g49490.1 68414.m05547 leucine-rich repeat family protein /
extensin family protein contains similarity to disease
resistance protein GI:3894383 from [Lycopersicon
esculentum]; contains leucine-rich repeats,
Pfam:PF00560; contains proline rich extensin domains,
INTERPRO:IPR002965
Length = 847
Score = 30.7 bits (66), Expect = 0.92
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 5/44 (11%)
Frame = +3
Query: 339 QLPSNTPIMSKIMLPRSMSSHIPSRIPTPAI-----TSPNTKPV 455
Q P+ + S++ P S S+ PS+ PTP + +PN+KPV
Sbjct: 726 QAPTTSSETSQVPTPSSESNQSPSQAPTPILEPVHAPTPNSKPV 769
>At4g37450.1 68417.m05301 arabinogalactan-protein (AGP18) identical
to gi_11935088_gb_AAG41964
Length = 209
Score = 29.5 bits (63), Expect = 2.1
Identities = 17/54 (31%), Positives = 26/54 (48%)
Frame = +3
Query: 354 TPIMSKIMLPRSMSSHIPSRIPTPAITSPNTKPVMVMS*KANTLYSSLMVPSQV 515
+PI S P + S+ S +PA+TSP T P + A++ S P+ V
Sbjct: 23 SPISSPTKSPTTPSAPTTSPTKSPAVTSPTTAPAKTPTASASSPVESPKSPAPV 76
>At1g70640.1 68414.m08143 octicosapeptide/Phox/Bem1p (PB1)
domain-containing protein contains Pfam profile PF00564:
PB1 domain
Length = 174
Score = 29.5 bits (63), Expect = 2.1
Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 5/52 (9%)
Frame = +2
Query: 140 SSSNGTLYPSIESCCSSTD-SRSP----FDSTCRSYCSRRPRGNSSYIHASP 280
+++N + PS S SS SRSP TC S R R N Y+H SP
Sbjct: 113 TTANSSPPPSTTSSSSSKSRSRSPPSPSTPETCPSCVERSIRNNGCYVHRSP 164
>At3g53140.1 68416.m05856 O-diphenol-O-methyl transferase, putative
similar to GI:6688808 [Medicago sativa subsp. x varia],
caffeic acid O-methyltransferase (homt1), Populus
kitakamiensis, EMBL:PKHOMT1A
Length = 359
Score = 28.7 bits (61), Expect = 3.7
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = +3
Query: 171 LSHAAPVLTHAAPLIQHAGPIVHAAPVE 254
LS+AA VL H + A P+VH A VE
Sbjct: 115 LSYAAYVLQHHQEALMRAWPLVHTAVVE 142
>At1g19270.1 68414.m02397 ubiquitin interaction motif-containing
protein / LIM domain-containing protein weak similarity
to LIM-homeobox protein [Mus musculus] GI:2149584, Hic-5
[Mus musculus] GI:664955; contains Pfam profiles
PF02809: Ubiquitin interaction motif, PF00412: LIM
domain
Length = 532
Score = 28.7 bits (61), Expect = 3.7
Identities = 24/88 (27%), Positives = 32/88 (36%), Gaps = 4/88 (4%)
Frame = +2
Query: 131 RAFSSSNGTLYPSIESC--CSSTDSRSPFDSTCRSYCSRRPRGNSSYIHASPVVQHFSPV 304
R + N +P C CS S F ST +Y + Y V HF P
Sbjct: 183 RFLNCLNSLWHPECFRCYGCSQPISEYEF-STSGNYPFHKACYRERYHPKCDVCSHFIPT 241
Query: 305 QHAPVVHHAAIPIAVEH--SDHVEDHAP 382
HA ++ + A P V+ H D P
Sbjct: 242 NHAGLIEYRAHPFWVQKYCPSHEHDATP 269
>At1g30420.1 68414.m03718 ATP-binding cassette transport protein,
putative contains Pfam profiles PF00005: ABC
transporter, PF00664: ABC transporter transmembrane
region
Length = 1488
Score = 28.3 bits (60), Expect = 4.9
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = -2
Query: 130 SWRTMLWEDTAWPWPSSITPPWQIAKIEQTTAILKNMLRCLTE 2
SW T L + + P + WQ+ + +QT ++K RC TE
Sbjct: 241 SWMTPLMQ-LGYRKPITERDVWQLDQWDQTETLIKRFQRCWTE 282
>At5g31873.1 68418.m03777 hypothetical protein
Length = 271
Score = 27.9 bits (59), Expect = 6.5
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = -1
Query: 428 RRCGDPRRNMRTHTSREHDLRHDRSVRRQLESQRGARLEHVAQG 297
+R DPR N+R R H L +D V + G+ + HVA G
Sbjct: 196 KRMLDPRANLRPTEERFHGLAYDDPVDESTDPW-GSIVHHVAGG 238
>At5g28120.1 68418.m03396 hypothetical protein
Length = 506
Score = 27.9 bits (59), Expect = 6.5
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = -1
Query: 428 RRCGDPRRNMRTHTSREHDLRHDRSVRRQLESQRGARLEHVAQG 297
+R DPR N+R R H L +D V + G+ + HVA G
Sbjct: 394 KRMLDPRANLRPTEERFHGLAYDDPVDESTDPW-GSIVHHVAGG 436
>At5g28110.1 68418.m03395 hypothetical protein
Length = 493
Score = 27.9 bits (59), Expect = 6.5
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = -1
Query: 428 RRCGDPRRNMRTHTSREHDLRHDRSVRRQLESQRGARLEHVAQG 297
+R DPR N+R R H L +D V + G+ + HVA G
Sbjct: 394 KRMLDPRANLRPTEERFHGLAYDDPVDESTDPW-GSIVHHVAGG 436
>At3g30816.1 68416.m03949 hypothetical protein
Length = 342
Score = 27.9 bits (59), Expect = 6.5
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = -1
Query: 428 RRCGDPRRNMRTHTSREHDLRHDRSVRRQLESQRGARLEHVAQG 297
+R DPR N+R R H L +D V + G+ + HVA G
Sbjct: 231 KRMLDPRANLRPTEERFHGLAYDDPVDESTDPW-GSIVHHVAGG 273
>At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 565
Score = 27.5 bits (58), Expect = 8.6
Identities = 18/50 (36%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Frame = -1
Query: 476 RLSRHHHHGFRVGTCDRRCGDPRRNMRTHTSREHDLRH-DRSVRRQLESQ 330
R SRH H G R G + R R+HD R DR RR S+
Sbjct: 99 RSSRHRDHSRERGERRERGGRDDDDYRRSRDRDHDRRRDDRGGRRSRRSR 148
>At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 542
Score = 27.5 bits (58), Expect = 8.6
Identities = 18/50 (36%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Frame = -1
Query: 476 RLSRHHHHGFRVGTCDRRCGDPRRNMRTHTSREHDLRH-DRSVRRQLESQ 330
R SRH H G R G + R R+HD R DR RR S+
Sbjct: 99 RSSRHRDHSRERGERRERGGRDDDDYRRSRDRDHDRRRDDRGGRRSRRSR 148
>At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 573
Score = 27.5 bits (58), Expect = 8.6
Identities = 18/50 (36%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Frame = -1
Query: 476 RLSRHHHHGFRVGTCDRRCGDPRRNMRTHTSREHDLRH-DRSVRRQLESQ 330
R SRH H G R G + R R+HD R DR RR S+
Sbjct: 99 RSSRHRDHSRERGERRERGGRDDDDYRRSRDRDHDRRRDDRGGRRSRRSR 148
>At2g25450.1 68415.m03048 2-oxoglutarate-dependent dioxygenase,
putative similar to 2A6 (GI:599622) and tomato ethylene
synthesis regulatory protein E8 (SP|P10967)
Length = 359
Score = 27.5 bits (58), Expect = 8.6
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Frame = +2
Query: 137 FSSSNGTLYPSIESCCSSTDSRSPFDSTCRS---YCSRRPRGNSSYIH 271
F+S + +Y I+ S + D+T S Y +R+P GNSS H
Sbjct: 309 FTSPSSRVYGPIKELLSELNPPKYRDTTSESSNHYVARKPNGNSSLDH 356
>At1g30410.1 68414.m03717 ATP-binding cassette transport protein,
putative similar to MgATP-energized glutathione
S-conjugate pump [Arabidopsis thaliana] GI:2909781;
contains Pfam profiles PF00005: ABC transporter,
PF00664: ABC transporter transmembrane region
Length = 1495
Score = 27.5 bits (58), Expect = 8.6
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -2
Query: 67 WQIAKIEQTTAILKNMLRCLTE 2
WQ+ K +QT ++K RC TE
Sbjct: 261 WQLDKWDQTETLIKRFQRCWTE 282
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,248,618
Number of Sequences: 28952
Number of extensions: 348625
Number of successful extensions: 1320
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1244
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1316
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1422784080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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