Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30318
         (468 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292351-1|CAL23163.2|  394|Tribolium castaneum gustatory recept...    23   1.1  
AM292350-1|CAL23162.2|  429|Tribolium castaneum gustatory recept...    23   1.1  
AM292328-1|CAL23140.2|  429|Tribolium castaneum gustatory recept...    23   1.1  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    23   1.9  

>AM292351-1|CAL23163.2|  394|Tribolium castaneum gustatory receptor
           candidate 30 protein.
          Length = 394

 Score = 23.4 bits (48), Expect = 1.1
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +2

Query: 128 LERAFTRVINFVRKKMRLLFYARGIMLQYIY 220
           L + F + +N +    RL FY  G+   Y+Y
Sbjct: 90  LHKIFAKGLNVIEAN-RLFFYCSGLASGYLY 119


>AM292350-1|CAL23162.2|  429|Tribolium castaneum gustatory receptor
           candidate 29 protein.
          Length = 429

 Score = 23.4 bits (48), Expect = 1.1
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +2

Query: 128 LERAFTRVINFVRKKMRLLFYARGIMLQYIY 220
           L + F + +N +    RL FY  G+   Y+Y
Sbjct: 90  LHKIFAKGLNVIEAN-RLFFYCSGLASGYLY 119


>AM292328-1|CAL23140.2|  429|Tribolium castaneum gustatory receptor
           candidate 7 protein.
          Length = 429

 Score = 23.4 bits (48), Expect = 1.1
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +2

Query: 128 LERAFTRVINFVRKKMRLLFYARGIMLQYIY 220
           L + F + +N +    RL FY  G+   Y+Y
Sbjct: 90  LHKIFAKGLNVIEAN-RLFFYCSGLASGYLY 119


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 22.6 bits (46), Expect = 1.9
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +3

Query: 3   GDGQMKCDPKACTPEPMLRQMI 68
           G G ++ DP +C P   LRQ I
Sbjct: 39  GGGAVQPDPGSCDPSVGLRQGI 60


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,026
Number of Sequences: 336
Number of extensions: 2109
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 10826639
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)