Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30318
         (468 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.08 |||mitochondrial ribosomal small subunit|Schizosaccharo...    26   2.5  
SPBC9B6.09c |mdl1||mitochondrial peptide-transporting ATPase|Sch...    26   3.3  

>SPMIT.08 |||mitochondrial ribosomal small
           subunit|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 227

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -1

Query: 141 KALSRQLVKRRKMFIFVV*LKQLPLSFVLASAL 43
           KALS  L+   K + F+V ++ LP+S    S+L
Sbjct: 81  KALSNHLLYSSKNYSFIVNIRALPISTPYGSSL 113


>SPBC9B6.09c |mdl1||mitochondrial peptide-transporting
           ATPase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 726

 Score = 25.8 bits (54), Expect = 3.3
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = +2

Query: 5   RRSNEMRSKSVHSRADAKTNDSGSCFS*TTKMNIFRRFT 121
           R ++ + SK   ++  +K N +G+  +   K+N+FR FT
Sbjct: 111 RHNSTVPSKDEQAQDISKINTNGTLQTPNKKVNVFRLFT 149


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,748,909
Number of Sequences: 5004
Number of extensions: 33446
Number of successful extensions: 67
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 178394480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)