Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30318
         (468 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0014 - 19267601-19267831,19268338-19268454,19268733-192688...    29   1.9  

>11_06_0014 -
           19267601-19267831,19268338-19268454,19268733-19268890,
           19269501-19269612,19269721-19269908,19270344-19270436,
           19270521-19270708,19271635-19271720,19272662-19272811,
           19273930-19274065,19274143-19274222,19275546-19275626,
           19276114-19276245,19276490-19276610,19277457-19277518,
           19277846-19277974,19278514-19278573,19278689-19278772,
           19278852-19279532
          Length = 962

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 12/34 (35%), Positives = 22/34 (64%)
 Frame = -3

Query: 118 KTSKNVHLRRLAETAAAIICLSIGSGVHAFGSHF 17
           + S++ H+  ++ +AAA  C S+ S +H+ G HF
Sbjct: 636 RLSRSSHMENVSLSAAA--CRSLSSAIHSCGQHF 667


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,403,445
Number of Sequences: 37544
Number of extensions: 189536
Number of successful extensions: 353
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 350
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 353
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 943260316
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)