Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30318
         (468 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11363| Best HMM Match : Transposase_11 (HMM E-Value=2.3e-39)        29   1.9  
SB_55228| Best HMM Match : RVT_1 (HMM E-Value=0.028)                   28   3.4  
SB_31891| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.9  

>SB_11363| Best HMM Match : Transposase_11 (HMM E-Value=2.3e-39)
          Length = 402

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
 Frame = +1

Query: 124 LSRKSLHKGNKLCEKKNASTLLCTWNNAPIHLSRWSSLRFRVIRLMS*K*TVTLSG-DMA 300
           L  + LHK      + +AS  +C+ N  PI L  WS +R +  RLM  + +V L G  + 
Sbjct: 65  LGNRHLHKERLAVYRWHAS-FICSGNTMPIVLVDWSDIREQK-RLMVLRASVALHGRSVT 122

Query: 301 LY 306
           LY
Sbjct: 123 LY 124


>SB_55228| Best HMM Match : RVT_1 (HMM E-Value=0.028)
          Length = 391

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 10/34 (29%), Positives = 21/34 (61%)
 Frame = -3

Query: 292 HLKVSLFIFNSLIL*HETLNYSIGINVLEHYSTC 191
           H+K +L+  +  +   +  +Y+  +N+LEH+S C
Sbjct: 205 HIKCTLYADDMAVFVKDVASYNSLMNLLEHFSVC 238


>SB_31891| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 282

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 18/63 (28%), Positives = 25/63 (39%)
 Frame = -3

Query: 190 IEE*THFFSHKVYYPCEGSFETIGKTSKNVHLRRLAETAAAIICLSIGSGVHAFGSHFI* 11
           ++E      +K ++P   SF       K +    + E     I  S  SGV   GS FI 
Sbjct: 171 LQEKAGVVDYKGFFPNRNSFNITPVMQKRMSTDAMKECQLVTIQFSWKSGVKPIGSSFIG 230

Query: 10  PSP 2
            SP
Sbjct: 231 TSP 233


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,429,851
Number of Sequences: 59808
Number of extensions: 226471
Number of successful extensions: 429
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 419
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 429
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 969807871
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)