Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30318
         (468 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70845-4|AAB09102.1|  340|Caenorhabditis elegans Hypothetical pr...    28   2.9  
AL132948-21|CAC51051.2|  453|Caenorhabditis elegans Hypothetical...    28   3.8  
AF016446-13|AAC24172.1|  349|Caenorhabditis elegans Seven tm rec...    28   3.8  

>U70845-4|AAB09102.1|  340|Caenorhabditis elegans Hypothetical
           protein F22H10.5 protein.
          Length = 340

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = +1

Query: 112 TFYQLSRKSLHKGNKLCEKKNASTLLCTWNNAPIHL 219
           T  Q   + LH GN L +K  A  L    NN P+ +
Sbjct: 251 TELQFEHRDLHLGNVLIDKTGAEELEFVLNNRPVRI 286


>AL132948-21|CAC51051.2|  453|Caenorhabditis elegans Hypothetical
           protein Y39B6A.29 protein.
          Length = 453

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 14/50 (28%), Positives = 21/50 (42%)
 Frame = -3

Query: 169 FSHKVYYPCEGSFETIGKTSKNVHLRRLAETAAAIICLSIGSGVHAFGSH 20
           F + +YY   G + T   T K +            ICL + SG+ A  +H
Sbjct: 116 FGYALYYQGHGGYLTSHSTRKTIESNINIAWCVGCICLLLSSGILATVTH 165


>AF016446-13|AAC24172.1|  349|Caenorhabditis elegans Seven tm
           receptor protein 211 protein.
          Length = 349

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = -3

Query: 157 VYYPCEGSFETIGKTSKNVHLRRLAETAAAIICLSIGSGVHAFGSHF 17
           +++  E +F  I  TS +   ++L E  A I C   GS +  F  HF
Sbjct: 65  IFHSFESTFMLIVDTSSSKVNKKLWEILAVIYCGFYGSSLAIFSIHF 111


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,599,257
Number of Sequences: 27780
Number of extensions: 185206
Number of successful extensions: 381
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 374
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 381
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 839684522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)