Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30318
         (468 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    23   1.6  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    22   3.8  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   5.0  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    21   6.6  

>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 23.0 bits (47), Expect = 1.6
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -3

Query: 166 SHKVYYPCEGSFETIGK 116
           SH+   P EG F+T+ K
Sbjct: 36  SHEASAPAEGKFKTVSK 52


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +1

Query: 199 NNAPIHLSRWSSLRFRVI 252
           NN PI + RW+   F  I
Sbjct: 64  NNVPIDVDRWNGKTFVTI 81


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.4 bits (43), Expect = 5.0
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -3

Query: 277 LFIFNSLIL*HETLNYSIGINVLEHY 200
           LF+F+ L      LNYS  +N+  +Y
Sbjct: 119 LFVFDDLNDYINRLNYSAFVNLTAYY 144


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.0 bits (42), Expect = 6.6
 Identities = 17/41 (41%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
 Frame = -3

Query: 163 HKVYYPCEGSFETIGKTSKNVHLRR--LAETAAAII-CLSI 50
           HK YYPC    E       N+ LRR  L  T   I+ C+SI
Sbjct: 211 HKKYYPC--CDEPYPDIFFNITLRRKTLFYTVNLIVPCVSI 249


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 112,001
Number of Sequences: 438
Number of extensions: 2029
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12559158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)