Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30318
         (468 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g64380.1 68418.m08087 fructose-1,6-bisphosphatase family prot...    27   6.3  
At2g25710.2 68415.m03082 holocarboxylase synthetase 1 (HCS1) ide...    27   6.3  
At2g25710.1 68415.m03081 holocarboxylase synthetase 1 (HCS1) ide...    27   6.3  

>At5g64380.1 68418.m08087 fructose-1,6-bisphosphatase family protein
           similar to SP|P22418 Fructose-1,6-bisphosphatase,
           chloroplast precursor (EC 3.1.3.11)
           (D-fructose-1,6-bisphosphate 1-phosphohydrolase)
           (FBPase) {Spinacia oleracea}; contains Pfam profile
           PF00316: fructose-1,6-bisphosphatase
          Length = 404

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = -3

Query: 79  TAAAIICLSIGSGVHAF 29
           ++A I C+++GSG HAF
Sbjct: 234 SSATIFCVTLGSGTHAF 250


>At2g25710.2 68415.m03082 holocarboxylase synthetase 1 (HCS1)
           identical to holocarboxylase synthetase 1 (hcs1)
           [Arabidopsis thaliana] GI:19698365
          Length = 367

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 14/49 (28%), Positives = 21/49 (42%)
 Frame = -2

Query: 251 MTRNLKLLHRDKCIGALFHVHRRVDAFFFSQSLLPL*RLFRDNW*NVEK 105
           M     LL R++ +GA FH   +    F  Q    L  L+   W + E+
Sbjct: 261 MAPESNLLKREEILGAFFHKFEKFFDLFMDQGFKSLEELYYRTWLHSEQ 309


>At2g25710.1 68415.m03081 holocarboxylase synthetase 1 (HCS1)
           identical to holocarboxylase synthetase 1 (hcs1)
           [Arabidopsis thaliana] GI:19698365
          Length = 367

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 14/49 (28%), Positives = 21/49 (42%)
 Frame = -2

Query: 251 MTRNLKLLHRDKCIGALFHVHRRVDAFFFSQSLLPL*RLFRDNW*NVEK 105
           M     LL R++ +GA FH   +    F  Q    L  L+   W + E+
Sbjct: 261 MAPESNLLKREEILGAFFHKFEKFFDLFMDQGFKSLEELYYRTWLHSEQ 309


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,719,545
Number of Sequences: 28952
Number of extensions: 160516
Number of successful extensions: 300
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 298
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 300
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 791932800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)