Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30317
         (743 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    23   3.4  
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    22   4.5  
AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory recept...    22   6.0  
AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    22   6.0  

>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +2

Query: 2   GDGQMKCDPKACTPEPMLRQMI 67
           G G ++ DP +C P   LRQ I
Sbjct: 39  GGGAVQPDPGSCDPSVGLRQGI 60


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
           candidate 46 protein.
          Length = 1451

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +3

Query: 426 SQCQTIVLS*IVTMHFTISKL 488
           ++ Q++VL  I T+H  +SKL
Sbjct: 568 TKAQSVVLGRICTLHHHLSKL 588


>AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory receptor
           candidate 59 protein.
          Length = 489

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -3

Query: 630 NLLVIKMVKIPAIFLTCEA*LTQYIPWSLNLSFVL 526
           ++L+ K  K   IF+TCE      +  S  L+F+L
Sbjct: 120 HMLIWKSYKRTQIFITCELFFVILLWISFFLNFML 154


>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -3

Query: 672 KQREMTNLKSVKQINLLVIKMVKI 601
           ++R   NLKS+K++NL   K+  I
Sbjct: 132 ERRAFMNLKSLKRLNLKGNKIATI 155


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,293
Number of Sequences: 336
Number of extensions: 3158
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 19819879
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)