Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30317
         (743 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.08 |||mitochondrial ribosomal small subunit|Schizosaccharo...    26   4.9  
SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   6.5  
SPBC9B6.09c |mdl1||mitochondrial peptide-transporting ATPase|Sch...    26   6.5  

>SPMIT.08 |||mitochondrial ribosomal small
           subunit|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 227

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -1

Query: 140 KALSRQLVKRRKMFIFVV*LKQLPLSFVLASAL 42
           KALS  L+   K + F+V ++ LP+S    S+L
Sbjct: 81  KALSNHLLYSSKNYSFIVNIRALPISTPYGSSL 113


>SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 575

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = +2

Query: 575 ASQVRKIAGILTIFITSKLICFTDLRLVISLCFYTML 685
           +S V+ I GIL +  +++++CF   R+ +   FY +L
Sbjct: 84  SSFVKSIVGILEVDASNEILCFR--RICLLCVFYKLL 118


>SPBC9B6.09c |mdl1||mitochondrial peptide-transporting
           ATPase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 726

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = +1

Query: 4   RRSNEMRSKSVHSRADAKTNDSGSCFS*TTKMNIFRRFT 120
           R ++ + SK   ++  +K N +G+  +   K+N+FR FT
Sbjct: 111 RHNSTVPSKDEQAQDISKINTNGTLQTPNKKVNVFRLFT 149


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,704,953
Number of Sequences: 5004
Number of extensions: 50608
Number of successful extensions: 103
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)