Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30317
         (743 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0246 + 21837144-21838194,21838692-21840038,21840576-218406...    30   1.7  
11_06_0014 - 19267601-19267831,19268338-19268454,19268733-192688...    29   3.9  
01_06_0192 + 27347369-27348826,27349124-27349264,27349350-273510...    28   9.0  

>09_06_0246 +
           21837144-21838194,21838692-21840038,21840576-21840656,
           21842740-21842924
          Length = 887

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +1

Query: 592 DRRNLDHFYYK*INLFYRFKISHFSLFLHD 681
           D  N  HFY   ++  +RF I HF L L+D
Sbjct: 519 DDNNSGHFYVSSLDRDHRFDIGHFKLCLYD 548


>11_06_0014 -
           19267601-19267831,19268338-19268454,19268733-19268890,
           19269501-19269612,19269721-19269908,19270344-19270436,
           19270521-19270708,19271635-19271720,19272662-19272811,
           19273930-19274065,19274143-19274222,19275546-19275626,
           19276114-19276245,19276490-19276610,19277457-19277518,
           19277846-19277974,19278514-19278573,19278689-19278772,
           19278852-19279532
          Length = 962

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 12/34 (35%), Positives = 22/34 (64%)
 Frame = -3

Query: 117 KTSKNVHLRRLAETAAAIICLSIGSGVHAFGSHF 16
           + S++ H+  ++ +AAA  C S+ S +H+ G HF
Sbjct: 636 RLSRSSHMENVSLSAAA--CRSLSSAIHSCGQHF 667


>01_06_0192 +
           27347369-27348826,27349124-27349264,27349350-27351081,
           27353739-27354606,27354784-27355957
          Length = 1790

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 13/22 (59%), Positives = 15/22 (68%)
 Frame = -1

Query: 314 LIIYRVPCHLKVSLFIFNSLYL 249
           L+ Y VPC LK  L +F SLYL
Sbjct: 931 LVSYLVPCLLKPLLHLFISLYL 952


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,635,824
Number of Sequences: 37544
Number of extensions: 270308
Number of successful extensions: 434
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 429
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 434
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1968901276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)