Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30317
         (743 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g28470.1 68417.m04073 26S proteasome regulatory subunit, puta...    27   9.9  
At1g77990.1 68414.m09088 sulfate transporter identical to sulfat...    27   9.9  

>At4g28470.1 68417.m04073 26S proteasome regulatory subunit,
           putative contains Pfam domain PF01851:
           Proteasome/cyclosome repeat
          Length = 1103

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/43 (27%), Positives = 20/43 (46%)
 Frame = +1

Query: 598 RNLDHFYYK*INLFYRFKISHFSLFLHDVTNVNLVSRKYKVII 726
           RNL  +YYK  +L +      F L  H +  V+   R   +++
Sbjct: 800 RNLSSYYYKDASLLFCVTFYDFFLSFHGINTVSTYDRLVLIVL 842


>At1g77990.1 68414.m09088 sulfate transporter identical to sulfate
           transporter [Arabidopsis thaliana] GI:1498120
          Length = 658

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +2

Query: 566 VN*ASQVRKIAGILTIFITSKLICFTDLRLV 658
           +N      K AG+LT+ I+S L+CF +   +
Sbjct: 518 INQYPMANKTAGLLTLRISSPLLCFANANFI 548


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,407,044
Number of Sequences: 28952
Number of extensions: 239071
Number of successful extensions: 475
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 466
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 475
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1643603136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)