Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30316
(727 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P41042 Cluster: 40S ribosomal protein S4; n=38; Eukaryo... 187 2e-46
UniRef50_P62701 Cluster: 40S ribosomal protein S4, X isoform; n=... 186 4e-46
UniRef50_UPI000065EA48 Cluster: similar to 40S ribosomal protein... 119 1e-40
UniRef50_P49204 Cluster: 40S ribosomal protein S4-2; n=55; Eukar... 161 2e-38
UniRef50_UPI00006CBCC9 Cluster: Ribosomal family S4e containing ... 144 3e-33
UniRef50_UPI00005A08FF Cluster: PREDICTED: similar to 40S riboso... 143 3e-33
UniRef50_UPI0000499069 Cluster: 40S ribosomal protein S4; n=2; E... 139 6e-32
UniRef50_A2ECC6 Cluster: 40S ribosomal protein S4-C, putative; n... 129 8e-29
UniRef50_Q9XG32 Cluster: 40S ribosomal protein S4; n=1; Guillard... 128 1e-28
UniRef50_UPI0000D9EB72 Cluster: PREDICTED: similar to 40S riboso... 124 3e-27
UniRef50_Q7KJQ3 Cluster: 40S ribosomal protein S4; n=9; Eukaryot... 118 2e-25
UniRef50_Q8SRB9 Cluster: 40S RIBOSOMAL PROTEIN S4; n=1; Encephal... 78 3e-13
UniRef50_P62428 Cluster: 30S ribosomal protein S4e; n=12; Euryar... 63 8e-09
UniRef50_Q8TW18 Cluster: 30S ribosomal protein S4e; n=1; Methano... 62 1e-08
UniRef50_A5UL76 Cluster: Ribosomal protein S4e; n=2; Methanobact... 61 3e-08
UniRef50_Q56230 Cluster: 30S ribosomal protein S4e; n=3; Thermop... 56 1e-06
UniRef50_Q40941 Cluster: 40S ribosomal protein S4; n=2; Bigelowi... 55 2e-06
UniRef50_Q8ZTD3 Cluster: 30S ribosomal protein S4e; n=4; Pyrobac... 54 3e-06
UniRef50_Q9YF85 Cluster: 30S ribosomal protein S4e; n=4; Desulfu... 51 3e-05
UniRef50_O05634 Cluster: 30S ribosomal protein S4e; n=5; Sulfolo... 48 2e-04
UniRef50_A3H986 Cluster: Ribosomal protein S4E; n=1; Caldivirga ... 47 4e-04
UniRef50_A1RWS3 Cluster: Ribosomal protein S4E, central; n=1; Th... 47 5e-04
UniRef50_UPI000038E22A Cluster: hypothetical protein Faci_030011... 46 7e-04
UniRef50_P62429 Cluster: 30S ribosomal protein S4e; n=1; Nanoarc... 46 0.001
UniRef50_Q673R6 Cluster: Ribosomal protein S4; n=2; environmenta... 43 0.009
UniRef50_Q0W1X6 Cluster: 30S ribosomal protein S4E; n=2; Euryarc... 43 0.009
UniRef50_A3CT09 Cluster: Ribosomal protein S4E, central; n=3; Me... 42 0.012
UniRef50_Q8PV38 Cluster: 30S ribosomal protein S4e; n=4; Euryarc... 41 0.027
UniRef50_A2SPL4 Cluster: Ribosomal protein S4E, central; n=1; Me... 41 0.036
UniRef50_Q12ZT9 Cluster: Ribosomal protein S4E; n=1; Methanococc... 40 0.063
UniRef50_P22510 Cluster: 30S ribosomal protein S4E; n=6; Halobac... 37 0.44
UniRef50_Q00TF1 Cluster: Chromosome 17 contig 1, DNA sequence; n... 36 0.77
UniRef50_Q6L1B5 Cluster: 30S ribosomal protein S4e; n=1; Picroph... 36 1.0
UniRef50_Q7U147 Cluster: PROBABLE OXIDASE; n=7; Mycobacterium tu... 34 4.1
UniRef50_A6E8K7 Cluster: Putative uncharacterized protein; n=1; ... 34 4.1
UniRef50_Q8N844 Cluster: CDNA FLJ40027 fis, clone STOMA2008614; ... 34 4.1
UniRef50_Q6FE15 Cluster: Component of chemotactic signal transdu... 33 7.2
>UniRef50_P41042 Cluster: 40S ribosomal protein S4; n=38;
Eukaryota|Rep: 40S ribosomal protein S4 - Drosophila
melanogaster (Fruit fly)
Length = 261
Score = 187 bits (456), Expect = 2e-46
Identities = 91/154 (59%), Positives = 105/154 (68%)
Frame = +3
Query: 246 PYLPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYL 425
P PAG+MDV+++EKT E FRL+YDVKGRF IHRI+ EEAKYKLCKVK+ G K VP+L
Sbjct: 80 PTYPAGYMDVITLEKTGEFFRLVYDVKGRFVIHRISAEEAKYKLCKVKKTQLGAKGVPFL 139
Query: 426 VTHDGRTIRYPDPLIKVNDSIQLDIATTRLWTSSSLSPGTCV*SREAVTWGFWAPSCPAR 605
VTHDGRTIRYPDPLI NDS+Q+DIA+ ++ G G
Sbjct: 140 VTHDGRTIRYPDPLIHANDSVQVDIASGKITDYIKFDSGNLCMITGGRNLGRVGTVVNRE 199
Query: 606 ENPGSFDIVHIKDSTGKTLATRLTNVSIIGKGPK 707
+PGSFDIVHIKDS G ATRLTNV IIGKG K
Sbjct: 200 RHPGSFDIVHIKDSQGHVFATRLTNVFIIGKGNK 233
Score = 119 bits (286), Expect = 8e-26
Identities = 55/64 (85%), Positives = 58/64 (90%)
Frame = +2
Query: 11 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 190
MARGPKKHLKRL APKAWMLDKLGGV+APRPSTGPHKLRE LPL+IFLRNRLKYAL G E
Sbjct: 1 MARGPKKHLKRLAAPKAWMLDKLGGVFAPRPSTGPHKLRESLPLLIFLRNRLKYALNGAE 60
Query: 191 S*KL 202
K+
Sbjct: 61 VTKI 64
Score = 42.7 bits (96), Expect = 0.009
Identities = 18/22 (81%), Positives = 20/22 (90%)
Frame = +1
Query: 190 ILKIVKQRLIKVDGKVRTDPTY 255
+ KIV QRL+KVDGKVRTDPTY
Sbjct: 61 VTKIVMQRLVKVDGKVRTDPTY 82
>UniRef50_P62701 Cluster: 40S ribosomal protein S4, X isoform;
n=137; Eukaryota|Rep: 40S ribosomal protein S4, X
isoform - Homo sapiens (Human)
Length = 263
Score = 186 bits (454), Expect = 4e-46
Identities = 85/151 (56%), Positives = 106/151 (70%)
Frame = +3
Query: 255 PAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTH 434
PAGFMDV+SI+KT E FRLIYD KGRF +HRITPEEAKYKLCKV+++ G K +P+LVTH
Sbjct: 83 PAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHLVTH 142
Query: 435 DGRTIRYPDPLIKVNDSIQLDIATTRLWTSSSLSPGTCV*SREAVTWGFWAPSCPARENP 614
D RTIRYPDPLIKVND+IQ+D+ T ++ G G +P
Sbjct: 143 DARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRERHP 202
Query: 615 GSFDIVHIKDSTGKTLATRLTNVSIIGKGPK 707
GSFD+VH+KD+ G + ATRL+N+ +IGKG K
Sbjct: 203 GSFDVVHVKDANGNSFATRLSNIFVIGKGNK 233
Score = 120 bits (289), Expect = 4e-26
Identities = 54/64 (84%), Positives = 59/64 (92%)
Frame = +2
Query: 11 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 190
MARGPKKHLKR+ APK WMLDKL GV+APRPSTGPHKLRECLPL+IFLRNRLKYALTG+E
Sbjct: 1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDE 60
Query: 191 S*KL 202
K+
Sbjct: 61 VKKI 64
Score = 34.7 bits (76), Expect = 2.4
Identities = 15/22 (68%), Positives = 17/22 (77%)
Frame = +1
Query: 190 ILKIVKQRLIKVDGKVRTDPTY 255
+ KI QR IK+DGKVRTD TY
Sbjct: 61 VKKICMQRFIKIDGKVRTDITY 82
>UniRef50_UPI000065EA48 Cluster: similar to 40S ribosomal protein
S4, X isoform (LOC126235), mRNA; n=1; Takifugu
rubripes|Rep: similar to 40S ribosomal protein S4, X
isoform (LOC126235), mRNA - Takifugu rubripes
Length = 291
Score = 119 bits (286), Expect(2) = 1e-40
Identities = 54/114 (47%), Positives = 73/114 (64%)
Frame = +3
Query: 366 KYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTRLWTSSSLSPGT 545
+YKLCKVK++ G K +P+LVTHD RTIRYPDPLIKVND++++D+ T ++
Sbjct: 152 QYKLCKVKKILIGTKGIPHLVTHDARTIRYPDPLIKVNDTVRIDLDTGKITDFIKFDTSN 211
Query: 546 CV*SREAVTWGFWAPSCPARENPGSFDIVHIKDSTGKTLATRLTNVSIIGKGPK 707
G +PGSFD+VH+KDSTG + ATRL+N+ +IGKG K
Sbjct: 212 MCMVTGGANLGRIGVITNRERHPGSFDVVHVKDSTGNSFATRLSNIFVIGKGNK 265
Score = 118 bits (284), Expect = 1e-25
Identities = 53/63 (84%), Positives = 58/63 (92%)
Frame = +2
Query: 14 ARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNES 193
ARGPKKHLKR+ APK WMLDKL GV+APRPSTGPHKLRECLPL+IFLRNRLKYALTG+E
Sbjct: 2 ARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEV 61
Query: 194 *KL 202
K+
Sbjct: 62 KKI 64
Score = 70.5 bits (165), Expect(2) = 1e-40
Identities = 31/38 (81%), Positives = 34/38 (89%)
Frame = +3
Query: 255 PAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAK 368
P GFMDV+SI+KT E FRLIYDVKGRFT+HRIT EEAK
Sbjct: 83 PTGFMDVISIDKTGEHFRLIYDVKGRFTVHRITAEEAK 120
Score = 34.7 bits (76), Expect = 2.4
Identities = 15/22 (68%), Positives = 17/22 (77%)
Frame = +1
Query: 190 ILKIVKQRLIKVDGKVRTDPTY 255
+ KI QR IK+DGKVRTD TY
Sbjct: 61 VKKICMQRFIKIDGKVRTDITY 82
>UniRef50_P49204 Cluster: 40S ribosomal protein S4-2; n=55;
Eukaryota|Rep: 40S ribosomal protein S4-2 - Arabidopsis
thaliana (Mouse-ear cress)
Length = 262
Score = 161 bits (390), Expect = 2e-38
Identities = 81/151 (53%), Positives = 98/151 (64%)
Frame = +3
Query: 255 PAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTH 434
PAGFMDVVSI KTNE FRL+YD KGRF +H I EEAK+KLCKV+ + G K +PYL T+
Sbjct: 83 PAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSIQFGQKGIPYLNTY 142
Query: 435 DGRTIRYPDPLIKVNDSIQLDIATTRLWTSSSLSPGTCV*SREAVTWGFWAPSCPARENP 614
DGRTIRYPDPLIK ND+I+LD+ ++ G V G ++
Sbjct: 143 DGRTIRYPDPLIKPNDTIKLDLEENKIVEFIKFDVGNVVMVTGGRNRGRVGVIKNREKHK 202
Query: 615 GSFDIVHIKDSTGKTLATRLTNVSIIGKGPK 707
GSF+ +HI+DSTG ATRL NV IGKG K
Sbjct: 203 GSFETIHIQDSTGHEFATRLGNVYTIGKGTK 233
Score = 109 bits (261), Expect = 9e-23
Identities = 48/60 (80%), Positives = 53/60 (88%)
Frame = +2
Query: 11 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 190
MARG KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPLV+ +RNRLKYALT E
Sbjct: 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYRE 60
Score = 34.3 bits (75), Expect = 3.1
Identities = 14/24 (58%), Positives = 19/24 (79%)
Frame = +1
Query: 184 KRILKIVKQRLIKVDGKVRTDPTY 255
+ ++ I+ QR I+VDGKVRTD TY
Sbjct: 59 REVISILMQRHIQVDGKVRTDKTY 82
>UniRef50_UPI00006CBCC9 Cluster: Ribosomal family S4e containing
protein; n=1; Tetrahymena thermophila SB210|Rep:
Ribosomal family S4e containing protein - Tetrahymena
thermophila SB210
Length = 370
Score = 144 bits (348), Expect = 3e-33
Identities = 66/151 (43%), Positives = 95/151 (62%)
Frame = +3
Query: 255 PAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTH 434
P G MDVV IEKT++ FR++YD KGRF + ++ EEAKYKL KV A GP +PY+VTH
Sbjct: 195 PTGLMDVVRIEKTDQSFRILYDTKGRFVLKSLSKEEAKYKLLKVTAKAIGPNQIPYIVTH 254
Query: 435 DGRTIRYPDPLIKVNDSIQLDIATTRLWTSSSLSPGTCV*SREAVTWGFWAPSCPARENP 614
D RTIR+P+P IK+ D+++ D+ ++ + L G ++ G ++
Sbjct: 255 DSRTIRFPNPEIKIGDTLKYDLVNNKIENFAHLESGNVCYIQQGNNIGRVGIIQHIEKHQ 314
Query: 615 GSFDIVHIKDSTGKTLATRLTNVSIIGKGPK 707
GSFDI H+KD+ G ATRL N+ ++G+G K
Sbjct: 315 GSFDICHVKDAKGNAFATRLGNIFVLGQGKK 345
Score = 62.1 bits (144), Expect = 1e-08
Identities = 39/88 (44%), Positives = 48/88 (54%), Gaps = 29/88 (32%)
Frame = +2
Query: 14 ARGPKKHLKRLNAPKAWMLDKLGG-------------------------VYAPRPSTGP- 115
ARGPKKHLKR+NAPK+WML+KLGG +Y + +T P
Sbjct: 83 ARGPKKHLKRINAPKSWMLNKLGGIWVITFFAFRLRKNDFITTIPKLKFIYFKKQATRPS 142
Query: 116 ---HKLRECLPLVIFLRNRLKYALTGNE 190
HKLRE LPL + L+ RL YAL G +
Sbjct: 143 QGPHKLRESLPLSVLLKERLNYALNGRD 170
>UniRef50_UPI00005A08FF Cluster: PREDICTED: similar to 40S ribosomal
protein S4, X isoform; n=3; Eutheria|Rep: PREDICTED:
similar to 40S ribosomal protein S4, X isoform - Canis
familiaris
Length = 240
Score = 143 bits (347), Expect = 3e-33
Identities = 65/128 (50%), Positives = 85/128 (66%)
Frame = +3
Query: 318 DVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLD 497
D KGRF +HRITPEEAKYKL KV+++ G K +P+LVTHD RTIRYPDPLIK+ND+IQ+D
Sbjct: 76 DTKGRFAVHRITPEEAKYKLGKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKMNDTIQID 135
Query: 498 IATTRLWTSSSLSPGTCV*SREAVTWGFWAPSCPARENPGSFDIVHIKDSTGKTLATRLT 677
+ T ++ G G +PGSFD+VH+KD+ G + ATRL+
Sbjct: 136 LETGKITDFFKFDTGNLCMVTGGTNLGRIGVITNRENHPGSFDVVHVKDANGNSFATRLS 195
Query: 678 NVSIIGKG 701
N+ +IGKG
Sbjct: 196 NIFVIGKG 203
Score = 110 bits (265), Expect = 3e-23
Identities = 49/64 (76%), Positives = 55/64 (85%)
Frame = +2
Query: 11 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 190
MA P+KHLK + APK WMLDKL GV+AP PSTGPHKLRECLPL+IFLRNRLKYALTG+E
Sbjct: 1 MAHSPRKHLKHVAAPKHWMLDKLTGVFAPHPSTGPHKLRECLPLIIFLRNRLKYALTGDE 60
Query: 191 S*KL 202
K+
Sbjct: 61 VKKI 64
>UniRef50_UPI0000499069 Cluster: 40S ribosomal protein S4; n=2;
Entamoeba histolytica HM-1:IMSS|Rep: 40S ribosomal
protein S4 - Entamoeba histolytica HM-1:IMSS
Length = 326
Score = 139 bits (337), Expect = 6e-32
Identities = 68/149 (45%), Positives = 93/149 (62%)
Frame = +3
Query: 255 PAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTH 434
P GFMDV+SI +T E FRL+Y+ K RF + +T E+AK+KLCK+++ G +PY+VTH
Sbjct: 83 PVGFMDVLSIPRTKENFRLMYNTKRRFCLVPLTAEQAKFKLCKIEKRVLGTGAIPYIVTH 142
Query: 435 DGRTIRYPDPLIKVNDSIQLDIATTRLWTSSSLSPGTCV*SREAVTWGFWAPSCPARENP 614
DGRTIRYP P ++ ND+I+L++ T ++ G G +P
Sbjct: 143 DGRTIRYPHPELQANDTIKLNLETGKIVDFVKFDIGNTAMMIGGNGMGRVGVIVKREVHP 202
Query: 615 GSFDIVHIKDSTGKTLATRLTNVSIIGKG 701
GSF+IVHIKD+ G T TRL NV +IGKG
Sbjct: 203 GSFEIVHIKDAKGNTFTTRLNNVFVIGKG 231
Score = 103 bits (248), Expect = 3e-21
Identities = 45/76 (59%), Positives = 57/76 (75%)
Frame = +2
Query: 11 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 190
MARGP+ HLKRLNAP WML KLGG +AP+PS GPH ++ECLPL++ LRNRL YAL G E
Sbjct: 1 MARGPRHHLKRLNAPHHWMLSKLGGTFAPKPSHGPHGMKECLPLILILRNRLNYALNGRE 60
Query: 191 S*KL*NNAS*RLMGKL 238
+ N + ++ GK+
Sbjct: 61 VTMIVKNRTIKIDGKI 76
Score = 33.5 bits (73), Expect = 5.4
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +1
Query: 184 KRILKIVKQRLIKVDGKVRTDPTY 255
+ + IVK R IK+DGK+RTD Y
Sbjct: 59 REVTMIVKNRTIKIDGKIRTDTRY 82
>UniRef50_A2ECC6 Cluster: 40S ribosomal protein S4-C, putative; n=4;
Trichomonas vaginalis G3|Rep: 40S ribosomal protein
S4-C, putative - Trichomonas vaginalis G3
Length = 269
Score = 129 bits (311), Expect = 8e-29
Identities = 61/148 (41%), Positives = 89/148 (60%)
Frame = +3
Query: 255 PAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTH 434
P G MDV+ + K+NELFR+IYD KGRF +H I +EA +KL +V + G K +P++VTH
Sbjct: 97 PTGLMDVIELGKSNELFRIIYDCKGRFCVHHIEAKEASFKLLRVNQFKIGAKGIPHVVTH 156
Query: 435 DGRTIRYPDPLIKVNDSIQLDIATTRLWTSSSLSPGTCV*SREAVTWGFWAPSCPARENP 614
DGRTI Y DP ++V+D+++ +I T + + G G +
Sbjct: 157 DGRTISYVDPSVRVHDALKFNIKTGEVESVIKFKVGDVAMVTAGGNVGRVGTIQKIEKQM 216
Query: 615 GSFDIVHIKDSTGKTLATRLTNVSIIGK 698
SFDIVH+KD++G ATR+ NV +IG+
Sbjct: 217 ASFDIVHLKDTSGAVFATRIMNVFVIGE 244
Score = 85.0 bits (201), Expect = 2e-15
Identities = 39/61 (63%), Positives = 45/61 (73%)
Frame = +2
Query: 11 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 190
M R + HLKRL AP W+L K G +A PSTGPHKLRECLP+ IFLR+RLKYALT E
Sbjct: 15 MPRCQRFHLKRLTAPHHWLLAKSAGKFASHPSTGPHKLRECLPINIFLRDRLKYALTAKE 74
Query: 191 S 193
+
Sbjct: 75 A 75
Score = 36.3 bits (80), Expect = 0.77
Identities = 20/40 (50%), Positives = 27/40 (67%), Gaps = 3/40 (7%)
Frame = +1
Query: 184 KRILKIVKQRLIKVDGKVRTD---PTYLLDLWMLSQLRRL 294
K + IVK+RL+KVDGKVRT+ PT L+D+ L + L
Sbjct: 73 KEAVAIVKRRLVKVDGKVRTNYRYPTGLMDVIELGKSNEL 112
>UniRef50_Q9XG32 Cluster: 40S ribosomal protein S4; n=1; Guillardia
theta|Rep: 40S ribosomal protein S4 - Guillardia theta
(Cryptomonas phi)
Length = 257
Score = 128 bits (309), Expect = 1e-28
Identities = 67/151 (44%), Positives = 92/151 (60%)
Frame = +3
Query: 255 PAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTH 434
PAG MDV+SI+ T E +R++YD G F +HRIT +E+ +KLCKV RV+ G K +PY+VTH
Sbjct: 83 PAGVMDVISIKTTKENYRVLYDNVGHFFLHRITIKESMFKLCKVIRVSIGSKGIPYIVTH 142
Query: 435 DGRTIRYPDPLIKVNDSIQLDIATTRLWTSSSLSPGTCV*SREAVTWGFWAPSCPARENP 614
DGRTIR+P+ LIK NDSI LD+ ++ S G+ + G
Sbjct: 143 DGRTIRFPNLLIKSNDSIVLDLLNNKVIDFIKFSIGSLCVVIKGSNIGRIGVFINTIGGQ 202
Query: 615 GSFDIVHIKDSTGKTLATRLTNVSIIGKGPK 707
GS IV +KD G + +T+ N+ +IGKG K
Sbjct: 203 GSDSIVCLKDFNGSSFSTQTKNLFVIGKGTK 233
Score = 89.4 bits (212), Expect = 8e-17
Identities = 38/61 (62%), Positives = 49/61 (80%)
Frame = +2
Query: 11 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 190
M+RG KKH KRLNAPK W+L+KLGG++APR S+GPHK + +PLVI +RN+LKY+ E
Sbjct: 1 MSRGIKKHYKRLNAPKKWLLNKLGGIWAPRSSSGPHKKQNSIPLVIVIRNKLKYSTNQRE 60
Query: 191 S 193
S
Sbjct: 61 S 61
>UniRef50_UPI0000D9EB72 Cluster: PREDICTED: similar to 40S ribosomal
protein S4, X isoform; n=1; Macaca mulatta|Rep:
PREDICTED: similar to 40S ribosomal protein S4, X
isoform - Macaca mulatta
Length = 244
Score = 124 bits (298), Expect = 3e-27
Identities = 63/152 (41%), Positives = 88/152 (57%)
Frame = +3
Query: 252 LPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVT 431
LP MDV+SI+K E F LIY + RF +HRITPEE KYKLCK++++ K +P+LV
Sbjct: 92 LPYWIMDVISIDKMGEDFCLIYGINRRFALHRITPEEVKYKLCKMRKIFVRAKGIPHLVI 151
Query: 432 HDGRTIRYPDPLIKVNDSIQLDIATTRLWTSSSLSPGTCV*SREAVTWGFWAPSCPAREN 611
HD T+R+PD LIKVND+IQ+D+ T ++ T+ G WG +
Sbjct: 152 HDIHTVRHPDSLIKVNDTIQIDLETGKI-TALKFDTGNLCLVTGGGNWGRIGVITNRERH 210
Query: 612 PGSFDIVHIKDSTGKTLATRLTNVSIIGKGPK 707
P SFD H+KD+ + + + +I KG K
Sbjct: 211 PVSFDTFHVKDANSNSFSI----IFVIDKGNK 238
Score = 97.1 bits (231), Expect = 4e-19
Identities = 47/67 (70%), Positives = 56/67 (83%)
Frame = +2
Query: 2 LSNMARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALT 181
++ +A GPK+HLKR+ A + WMLDKL GV+A RPSTGPHKLRECLP IFLRNRLKYALT
Sbjct: 9 ITAVAFGPKQHLKRVAALQHWMLDKLTGVFAARPSTGPHKLRECLP-HIFLRNRLKYALT 67
Query: 182 GNES*KL 202
G+E K+
Sbjct: 68 GDEVKKI 74
>UniRef50_Q7KJQ3 Cluster: 40S ribosomal protein S4; n=9;
Eukaryota|Rep: 40S ribosomal protein S4 - Leishmania
major
Length = 273
Score = 118 bits (283), Expect = 2e-25
Identities = 61/148 (41%), Positives = 81/148 (54%)
Frame = +3
Query: 255 PAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTH 434
PAGFMDVV I KT + FRL+YDVKGRF + ++ EA+ KL KV + T VP VTH
Sbjct: 80 PAGFMDVVEIPKTGDRFRLMYDVKGRFALVNLSEAEAQIKLMKVVNLYTATGRVPVAVTH 139
Query: 435 DGRTIRYPDPLIKVNDSIQLDIATTRLWTSSSLSPGTCV*SREAVTWGFWAPSCPARENP 614
DG IRYPDP + D+I ++ + G V G +P
Sbjct: 140 DGHRIRYPDPHTSIGDTIVYNVKEKKCVDLIKNRQGKAVIVTGGANRGRIGEIVKVECHP 199
Query: 615 GSFDIVHIKDSTGKTLATRLTNVSIIGK 698
G+F+I H+KD++G ATR N+ +IGK
Sbjct: 200 GAFNIAHLKDASGAEFATRAANIFVIGK 227
Score = 94.3 bits (224), Expect = 3e-18
Identities = 41/55 (74%), Positives = 45/55 (81%)
Frame = +2
Query: 26 KKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 190
KKHLKRL APK WML KL GV+APRP GPHKLRECLPL++ +RNRLKYAL E
Sbjct: 3 KKHLKRLYAPKDWMLSKLTGVFAPRPRPGPHKLRECLPLLVIIRNRLKYALNARE 57
>UniRef50_Q8SRB9 Cluster: 40S RIBOSOMAL PROTEIN S4; n=1;
Encephalitozoon cuniculi|Rep: 40S RIBOSOMAL PROTEIN S4 -
Encephalitozoon cuniculi
Length = 268
Score = 77.8 bits (183), Expect = 3e-13
Identities = 37/89 (41%), Positives = 59/89 (66%)
Frame = +3
Query: 249 YLPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLV 428
+ P G DVVSIEKT E FR++Y+V +F +HRI+ EEA Y+L KV + + +PY+V
Sbjct: 81 HFPVGLFDVVSIEKTGEHFRVLYNVHKKFHLHRISSEEASYRLTKVTKKYEN-QGIPYIV 139
Query: 429 THDGRTIRYPDPLIKVNDSIQLDIATTRL 515
+ G +IR+ DP I + +I++ T+++
Sbjct: 140 SSCGLSIRFCDPAIDLGYTIKISNETSKV 168
Score = 68.1 bits (159), Expect = 2e-10
Identities = 29/55 (52%), Positives = 37/55 (67%)
Frame = +2
Query: 11 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYA 175
M G + HLKR APK+WMLDK GG +A P++GPHK EC+PL + L+YA
Sbjct: 1 MPTGHRDHLKRKTAPKSWMLDKQGGTFALMPASGPHKKTECIPLGYLISRFLRYA 55
>UniRef50_P62428 Cluster: 30S ribosomal protein S4e; n=12;
Euryarchaeota|Rep: 30S ribosomal protein S4e -
Methanococcus maripaludis
Length = 244
Score = 62.9 bits (146), Expect = 8e-09
Identities = 28/62 (45%), Positives = 40/62 (64%)
Frame = +2
Query: 17 RGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNES* 196
+GP+KHLKRL AP W L + + RPS GPH + + LPL++ +R+ LKYA E+
Sbjct: 4 KGPRKHLKRLAAPANWQLPRKVKTFTVRPSPGPHSMDKSLPLLLVVRDVLKYADNAREAK 63
Query: 197 KL 202
K+
Sbjct: 64 KI 65
Score = 43.2 bits (97), Expect = 0.007
Identities = 28/83 (33%), Positives = 49/83 (59%), Gaps = 2/83 (2%)
Frame = +3
Query: 255 PAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKV--KRVATGPKNVPYLV 428
PAG MDV+SI + +E + +++D GR ++ + ++ KLCK+ K V G N+ L
Sbjct: 84 PAGLMDVLSIPEMDETYLVLFDESGRISLKK--TDKTDVKLCKIVNKTVVKG-GNI-QLN 139
Query: 429 THDGRTIRYPDPLIKVNDSIQLD 497
HDGR + ++KV+D+ + +
Sbjct: 140 LHDGR-----NQIVKVSDAAKAE 157
>UniRef50_Q8TW18 Cluster: 30S ribosomal protein S4e; n=1;
Methanopyrus kandleri|Rep: 30S ribosomal protein S4e -
Methanopyrus kandleri
Length = 260
Score = 62.5 bits (145), Expect = 1e-08
Identities = 30/62 (48%), Positives = 41/62 (66%), Gaps = 1/62 (1%)
Frame = +2
Query: 20 GPKKHLKRLNAPKAWMLD-KLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNES* 196
GPK+H+KRL AP AW + K GG +APRP GPH + +PL+I +R+ L YA E+
Sbjct: 7 GPKRHVKRLAAPYAWPIPRKEGGKFAPRPYPGPHTMDTSVPLLILVRDMLGYADYAREAR 66
Query: 197 KL 202
K+
Sbjct: 67 KI 68
Score = 47.2 bits (107), Expect = 4e-04
Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 8/93 (8%)
Frame = +3
Query: 246 PYLPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYL 425
P P G MDVV I +T + +R++ + R + I+ EEA+ K+C++K +
Sbjct: 84 PKFPVGIMDVVEIPRTGDRYRVVMNEHHRLDVVPISEEEARVKVCRIKNKTYVRGGNLQI 143
Query: 426 VTHDGRT--IRYPDP------LIKVNDSIQLDI 500
HDG+ + DP + V DS+ L++
Sbjct: 144 TMHDGKNWLVEIEDPTDPKEDVYSVGDSLVLEL 176
>UniRef50_A5UL76 Cluster: Ribosomal protein S4e; n=2;
Methanobacteriaceae|Rep: Ribosomal protein S4e -
Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM
861)
Length = 242
Score = 60.9 bits (141), Expect = 3e-08
Identities = 33/99 (33%), Positives = 50/99 (50%)
Frame = +3
Query: 255 PAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTH 434
P GFMD++ I KT E++R++ D KGR +++I EE KLCK+ +T + H
Sbjct: 84 PVGFMDIIEIPKTGEVYRVLLDKKGRLQLNKI--EENDSKLCKIVNKSTIKGGKIQVNLH 141
Query: 435 DGRTIRYPDPLIKVNDSIQLDIATTRLWTSSSLSPGTCV 551
DG+ + + V D I L + + L G CV
Sbjct: 142 DGKNVIIDENDYNVGDVIDLKVPDHEINEVFELKEGACV 180
Score = 46.8 bits (106), Expect = 5e-04
Identities = 22/73 (30%), Positives = 38/73 (52%)
Frame = +2
Query: 20 GPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNES*K 199
G +KHLK APK W + + +PS G H + L L + +R+ LK A E+ +
Sbjct: 5 GSRKHLKTYKAPKTWPIHPKEDTWTVKPSAGSHSIENSLSLTLVIRDILKLADNSREAKR 64
Query: 200 L*NNAS*RLMGKL 238
+ N+ + + G++
Sbjct: 65 IINSGNVLVDGRV 77
>UniRef50_Q56230 Cluster: 30S ribosomal protein S4e; n=3;
Thermoplasma|Rep: 30S ribosomal protein S4e -
Thermoplasma acidophilum
Length = 235
Score = 55.6 bits (128), Expect = 1e-06
Identities = 32/94 (34%), Positives = 46/94 (48%)
Frame = +3
Query: 261 GFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDG 440
GFMDV+ I E +R++Y+ +G + + T E A KL KV+ P N L THDG
Sbjct: 81 GFMDVIEIN--GESYRVVYNDQGALVLMKETKERASMKLLKVRSKVIAPGNRIQLGTHDG 138
Query: 441 RTIRYPDPLIKVNDSIQLDIATTRLWTSSSLSPG 542
RT D KV D + + ++ + PG
Sbjct: 139 RTFITDDKSKKVGDVWAVSVPDMKISEIIKMQPG 172
>UniRef50_Q40941 Cluster: 40S ribosomal protein S4; n=2;
Bigelowiella natans|Rep: 40S ribosomal protein S4 -
Bigelowiella natans (Pedinomonas minutissima)
(Chlorarachnion sp.(strain CCMP 621))
Length = 242
Score = 55.2 bits (127), Expect = 2e-06
Identities = 32/148 (21%), Positives = 63/148 (42%)
Frame = +3
Query: 255 PAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTH 434
P MD +S N+ +R++ G+ T++ I E K+CKV ++ ++T
Sbjct: 83 PISLMDTISFPLANKHYRVLLSKAGKLTVYEINQNEKDLKICKVIKIINASSKNKIIITD 142
Query: 435 DGRTIRYPDPLIKVNDSIQLDIATTRLWTSSSLSPGTCV*SREAVTWGFWAPSCPARENP 614
D R ++ IKV DS+ + + + G+ G A R+
Sbjct: 143 DLRELKINYAKIKVEDSLLIKTINDEIVYALKFEVGSLCLITRGKHLGTIAVIKEIRKTK 202
Query: 615 GSFDIVHIKDSTGKTLATRLTNVSIIGK 698
++H++ GK L + +++ +IG+
Sbjct: 203 SLRKMIHLEKIDGKKLTKKCSDLLVIGE 230
Score = 32.7 bits (71), Expect = 9.5
Identities = 18/64 (28%), Positives = 33/64 (51%)
Frame = +2
Query: 11 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 190
MA+G KKH KR+++ K G++ + S+GPH + + L+ ++ A E
Sbjct: 1 MAKGIKKHQKRISSNTMIKYKKKLGIFNTKISSGPHSKVKSVSLLNIIKKFFHLADNNQE 60
Query: 191 S*KL 202
+ K+
Sbjct: 61 AQKV 64
>UniRef50_Q8ZTD3 Cluster: 30S ribosomal protein S4e; n=4;
Pyrobaculum|Rep: 30S ribosomal protein S4e - Pyrobaculum
aerophilum
Length = 238
Score = 54.4 bits (125), Expect = 3e-06
Identities = 27/55 (49%), Positives = 35/55 (63%), Gaps = 1/55 (1%)
Frame = +2
Query: 32 HLKRLNAPKAWMLD-KLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNES 193
HL+R AP W + K GGV+ RPS GPH L LPL + +R+ LKYA T +E+
Sbjct: 3 HLRRTLAPAWWPIPRKKGGVWVVRPSPGPHSLAYSLPLALIIRDVLKYAKTMHEA 57
Score = 41.9 bits (94), Expect = 0.016
Identities = 28/85 (32%), Positives = 40/85 (47%), Gaps = 3/85 (3%)
Frame = +3
Query: 255 PAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTH 434
P G MDV+ I T E++R++ D + + I+ EEA KL +V+ L H
Sbjct: 79 PVGLMDVIEIVPTGEVYRVVPDADKYYNLLPISTEEAALKLLRVEGKTMVKGGRIQLHFH 138
Query: 435 DGR---TIRYPDPLIKVNDSIQLDI 500
DGR T IK DS+ D+
Sbjct: 139 DGRNLITTLEAGKQIKTFDSVLYDL 163
>UniRef50_Q9YF85 Cluster: 30S ribosomal protein S4e; n=4;
Desulfurococcales|Rep: 30S ribosomal protein S4e -
Aeropyrum pernix
Length = 253
Score = 50.8 bits (116), Expect = 3e-05
Identities = 29/75 (38%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Frame = +2
Query: 11 MAR-GPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGN 187
MAR G ++ LK L AP+ W + + +A +P GPH + LPL++ +RN L YA T
Sbjct: 1 MARMGGQRRLKALAAPRFWPILRKEYKWAVKPRPGPHPAEKSLPLLLIVRNVLGYAQTAR 60
Query: 188 ES*KL*NNAS*RLMG 232
E+ KL + R+ G
Sbjct: 61 EARKLISEGHFRVDG 75
Score = 47.2 bits (107), Expect = 4e-04
Identities = 31/79 (39%), Positives = 39/79 (49%), Gaps = 3/79 (3%)
Frame = +3
Query: 255 PAGFMDVVSIEKTNELFRLI-YDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVT 431
P GFMDV+ + T E FR++ Y VK F +H I EE K +++ T L
Sbjct: 84 PVGFMDVIEVVDTGEKFRMLPYPVK-FFKLHPIPEEEGDLKPVRIENKTTVKGGHVQLNL 142
Query: 432 HDGRTI--RYPDPLIKVND 482
HDGR I R DP V D
Sbjct: 143 HDGRNILVRVKDPRNPVED 161
>UniRef50_O05634 Cluster: 30S ribosomal protein S4e; n=5;
Sulfolobaceae|Rep: 30S ribosomal protein S4e -
Sulfolobus acidocaldarius
Length = 244
Score = 48.4 bits (110), Expect = 2e-04
Identities = 43/163 (26%), Positives = 70/163 (42%), Gaps = 8/163 (4%)
Frame = +3
Query: 255 PAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTH 434
P G MDVV I + R+I D T I+ E+AKYK ++ T V L
Sbjct: 78 PVGLMDVVEIPSADLRVRIIPDNVRYLTTINISREDAKYKFVRIMNKTTLKSGVLQLNLE 137
Query: 435 DGRTIRYP-DPLIKVN----DSIQLDIATTRLWTSSSLSPGT---CV*SREAVTWGFWAP 590
DGR I + L + N ++++++ ++ T+ ++ G + R A G +
Sbjct: 138 DGRNILLKGEELSQYNLPTLTTLKIELPEQKITTAYTIKEGVYAMIIGGRNAGLHGKISK 197
Query: 591 SCPARENPGSFDIVHIKDSTGKTLATRLTNVSIIGKGPKG*NL 719
A+ + +V ++ G T T L NV IG+ NL
Sbjct: 198 IQLAKYKRIKYSLVTLEGKDGSTFQTNLINVMAIGENEADSNL 240
Score = 35.1 bits (77), Expect = 1.8
Identities = 19/54 (35%), Positives = 27/54 (50%)
Frame = +2
Query: 32 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNES 193
H+ R AP + K + R GPHK++E +PL I L+ LK T E+
Sbjct: 3 HITRFEAPWFLKVGKKEYKWIIRSRAGPHKIQESVPLAILLKYYLKAVDTTREA 56
>UniRef50_A3H986 Cluster: Ribosomal protein S4E; n=1; Caldivirga
maquilingensis IC-167|Rep: Ribosomal protein S4E -
Caldivirga maquilingensis IC-167
Length = 237
Score = 47.2 bits (107), Expect = 4e-04
Identities = 19/54 (35%), Positives = 32/54 (59%)
Frame = +2
Query: 32 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNES 193
HL+R +P+ W +++ G ++ +PS GPH +PL + LR+ YA T E+
Sbjct: 3 HLRRSTSPEWWPVERKGAPWSIKPSPGPHPANSSIPLAVLLRDVFHYAKTLREA 56
Score = 40.3 bits (90), Expect = 0.047
Identities = 22/65 (33%), Positives = 30/65 (46%)
Frame = +3
Query: 255 PAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTH 434
P G MDV+ + NE +R+I D RI EA K+C+++ L H
Sbjct: 78 PVGLMDVIELTPINEYYRIIPDPVNFLRPIRIDKSEAGVKVCRIEDKTMVKAGKIQLNLH 137
Query: 435 DGRTI 449
DGR I
Sbjct: 138 DGRNI 142
>UniRef50_A1RWS3 Cluster: Ribosomal protein S4E, central; n=1;
Thermofilum pendens Hrk 5|Rep: Ribosomal protein S4E,
central - Thermofilum pendens (strain Hrk 5)
Length = 251
Score = 46.8 bits (106), Expect = 5e-04
Identities = 22/64 (34%), Positives = 34/64 (53%)
Frame = +2
Query: 2 LSNMARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALT 181
+ +G +HL+R AP W + + V+ +PS GPH L +P+ I LR+ YA T
Sbjct: 1 MGRKVKGSLRHLRRSVAPPFWPIKRKEYVWTVKPSPGPHSLLSSIPIGIVLRDVFGYAKT 60
Query: 182 GNES 193
E+
Sbjct: 61 MKEA 64
Score = 45.2 bits (102), Expect = 0.002
Identities = 22/65 (33%), Positives = 32/65 (49%)
Frame = +3
Query: 255 PAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTH 434
P G MDV+ I + +R++ D + I PEEA YKL +++R T H
Sbjct: 86 PVGLMDVLHIIPEEKYYRVVPDPARKLRFVEIKPEEAGYKLAQIRRKMTVKNGDLQFTLH 145
Query: 435 DGRTI 449
DGR +
Sbjct: 146 DGRNV 150
>UniRef50_UPI000038E22A Cluster: hypothetical protein Faci_03001139;
n=1; Ferroplasma acidarmanus fer1|Rep: hypothetical
protein Faci_03001139 - Ferroplasma acidarmanus fer1
Length = 241
Score = 46.4 bits (105), Expect = 7e-04
Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Frame = +3
Query: 255 PAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCK-VKRVATGPKNVPYLVT 431
P GFMDV+SI+ + ++YD KG+ I + P KL K VK+ G + L
Sbjct: 80 PVGFMDVLSIDTLENDYIIVYDRKGKLVIRQNAPGNKGLKLFKVVKKTIIGTGKI-QLGF 138
Query: 432 HDGRTIRYPDPLIKVNDSIQLDI 500
HDG+TI I +D + + I
Sbjct: 139 HDGKTIVTDRKDINTSDVLLMKI 161
>UniRef50_P62429 Cluster: 30S ribosomal protein S4e; n=1;
Nanoarchaeum equitans|Rep: 30S ribosomal protein S4e -
Nanoarchaeum equitans
Length = 234
Score = 46.0 bits (104), Expect = 0.001
Identities = 23/65 (35%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Frame = +3
Query: 255 PAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCK-VKRVATGPKNVPYLVT 431
P G DV++I + NE +R++ D +G+ + +I EEA K K +++V+ + Y +T
Sbjct: 84 PVGLFDVLAIPEINEYYRVLLDERGKLYLKKIDKEEANIKYGKIIRKVSVRGGKIQYTLT 143
Query: 432 HDGRT 446
DGRT
Sbjct: 144 -DGRT 147
Score = 41.5 bits (93), Expect = 0.021
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Frame = +2
Query: 26 KKHLKRLNAPKAWMLD-KLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNES*KL 202
K+HL+ L P+ W + K G + +PS GPH +P+ ++LR+ L A E L
Sbjct: 6 KRHLRSLAVPRTWPVPRKSRGYWIVKPSPGPHSKEFAMPIAVWLRDYLGLAENMREVRYL 65
Query: 203 *NN 211
NN
Sbjct: 66 LNN 68
>UniRef50_Q673R6 Cluster: Ribosomal protein S4; n=2; environmental
samples|Rep: Ribosomal protein S4 - uncultured marine
group II euryarchaeote DeepAnt-JyKC7
Length = 232
Score = 42.7 bits (96), Expect = 0.009
Identities = 17/48 (35%), Positives = 28/48 (58%)
Frame = +2
Query: 32 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYA 175
H+KRL P++W L + ++ +P+ G H C+PL + LR+ L A
Sbjct: 5 HMKRLTMPRSWPLTRKTDIWVQKPNPGGHSDEMCMPLGVILRDVLDLA 52
Score = 39.9 bits (89), Expect = 0.063
Identities = 23/67 (34%), Positives = 34/67 (50%)
Frame = +3
Query: 261 GFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDG 440
G MDV+++ + + FR I DV G+ I+ + A KLC+V +T + HDG
Sbjct: 82 GLMDVLTVGEDS--FRCILDVNGKLRYRSISDKAAASKLCRVMGKSTITDGKTQIHLHDG 139
Query: 441 RTIRYPD 461
R I D
Sbjct: 140 RNILVSD 146
>UniRef50_Q0W1X6 Cluster: 30S ribosomal protein S4E; n=2;
Euryarchaeota|Rep: 30S ribosomal protein S4E -
Uncultured methanogenic archaeon RC-I
Length = 234
Score = 42.7 bits (96), Expect = 0.009
Identities = 22/69 (31%), Positives = 36/69 (52%)
Frame = +2
Query: 32 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNES*KL*NN 211
HLKR+ AP+ W + + + +P G H +PLV+ LR+ LK A +E K+ +
Sbjct: 5 HLKRVAAPRTWPITRKTSKWVAKPMPGAHSEERGMPLVVVLRDLLKVADNTSEIKKILHE 64
Query: 212 AS*RLMGKL 238
+ GK+
Sbjct: 65 GKVLVDGKV 73
>UniRef50_A3CT09 Cluster: Ribosomal protein S4E, central; n=3;
Methanomicrobiales|Rep: Ribosomal protein S4E, central -
Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498
/ JR1)
Length = 242
Score = 42.3 bits (95), Expect = 0.012
Identities = 26/82 (31%), Positives = 37/82 (45%)
Frame = +3
Query: 261 GFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDG 440
G D+VSI K + +R+ DVKG I E AK +LCK++ T L G
Sbjct: 80 GVFDIVSIPKLGKHYRIQLDVKGNLVAIEIPAESAKTRLCKIRNKTTVKGGKVQLNFAFG 139
Query: 441 RTIRYPDPLIKVNDSIQLDIAT 506
+ D K DS+ + + T
Sbjct: 140 ANV-LADNTYKAKDSVVVTLGT 160
Score = 35.1 bits (77), Expect = 1.8
Identities = 19/58 (32%), Positives = 31/58 (53%)
Frame = +2
Query: 29 KHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNES*KL 202
K+LKRL AP +W + K + + + GPH LP+ ++LR + A +E K+
Sbjct: 3 KYLKRLVAPGSWHIPKKVQKFVMKTAPGPHN-AGALPVGVWLREHIGLAQNASEVKKI 59
>UniRef50_Q8PV38 Cluster: 30S ribosomal protein S4e; n=4;
Euryarchaeota|Rep: 30S ribosomal protein S4e -
Methanosarcina mazei (Methanosarcina frisia)
Length = 235
Score = 41.1 bits (92), Expect = 0.027
Identities = 20/65 (30%), Positives = 33/65 (50%)
Frame = +3
Query: 255 PAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTH 434
P G DV+++ NE +R++ D KGR ++++ E KLC++ T L +
Sbjct: 78 PVGLFDVITLPLVNEAYRMLQDEKGRLVLYKLN-ETNVNKLCRINNKTTVKGGKIQLNLN 136
Query: 435 DGRTI 449
DG I
Sbjct: 137 DGTNI 141
Score = 39.9 bits (89), Expect = 0.063
Identities = 17/46 (36%), Positives = 25/46 (54%)
Frame = +2
Query: 32 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLK 169
H KRL+ PK+W + + G + GPH LPL + +R+ LK
Sbjct: 3 HQKRLSVPKSWKVGRKGNKWISTTRPGPHSQARSLPLGLIIRDVLK 48
>UniRef50_A2SPL4 Cluster: Ribosomal protein S4E, central; n=1;
Methanocorpusculum labreanum Z|Rep: Ribosomal protein
S4E, central - Methanocorpusculum labreanum (strain ATCC
43576 / DSM 4855 / Z)
Length = 239
Score = 40.7 bits (91), Expect = 0.036
Identities = 20/55 (36%), Positives = 31/55 (56%)
Frame = +2
Query: 38 KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNES*KL 202
KR+ AP AW + + Y S+GPH LP+ I+LR+ +++AL E K+
Sbjct: 5 KRMTAPDAWQIARKESKYVVSTSSGPHD-GSALPIGIWLRDHMQFALNTKEVRKI 58
>UniRef50_Q12ZT9 Cluster: Ribosomal protein S4E; n=1;
Methanococcoides burtonii DSM 6242|Rep: Ribosomal
protein S4E - Methanococcoides burtonii (strain DSM
6242)
Length = 236
Score = 39.9 bits (89), Expect = 0.063
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +2
Query: 32 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRL 166
H KR++ PK+W + K + GPH + +PL + LR+ L
Sbjct: 4 HQKRISVPKSWQISKKSNKWITSTRPGPHNRLQSIPLAVILRDML 48
Score = 33.5 bits (73), Expect = 5.4
Identities = 14/28 (50%), Positives = 20/28 (71%)
Frame = +2
Query: 509 KIMDFIKFESGNLCMITGGRNLGLLGTI 592
K++ IK+E GNL MI GG + G +G+I
Sbjct: 162 KVVKHIKYEVGNLAMIVGGSHAGEVGSI 189
Score = 33.1 bits (72), Expect = 7.2
Identities = 14/45 (31%), Positives = 27/45 (60%)
Frame = +3
Query: 255 PAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVK 389
P G MD+++I N +R++ D K R ++++ A KLC+++
Sbjct: 79 PVGLMDIITIPLNNVEYRVMLDGKSRLVLNKLDGTGAD-KLCRIE 122
>UniRef50_P22510 Cluster: 30S ribosomal protein S4E; n=6;
Halobacteriaceae|Rep: 30S ribosomal protein S4E -
Haloarcula marismortui (Halobacterium marismortui)
Length = 234
Score = 37.1 bits (82), Expect = 0.44
Identities = 17/48 (35%), Positives = 27/48 (56%)
Frame = +2
Query: 32 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYA 175
H KRL+ P +W +++ + + GPH +PL+I LR+ L YA
Sbjct: 4 HQKRLSVPNSWPVERKTATFTVKAGAGPHG-ESGVPLLIVLRDVLGYA 50
>UniRef50_Q00TF1 Cluster: Chromosome 17 contig 1, DNA sequence; n=1;
Ostreococcus tauri|Rep: Chromosome 17 contig 1, DNA
sequence - Ostreococcus tauri
Length = 197
Score = 36.3 bits (80), Expect = 0.77
Identities = 36/146 (24%), Positives = 58/146 (39%)
Frame = -3
Query: 707 LWALADYGHVC*PRGQGFSRGILDVHNVEGTGIFSRGTRWCPKAPSYGLP*XXXXXXXXX 528
L A D HV R + + G+L VHN EGT +
Sbjct: 48 LVARTDGEHVRRARRKLLTGGVLQVHNFEGTDVLLAALDHPDATGVVTTGDHAQSADVEL 107
Query: 527 XXSP*SCSCNV*LDGIVDFDKWVWIADGAAIMRYQVRNILRSGRHTLDFTQLVLSLLRGD 348
+V +G+ D + + +GAA+++ R+ L QLVL D
Sbjct: 108 DRIGDLVRRDVDHNGVTLLDHGIRVTNGAAVVQTDARHALVPELLAPHLAQLVLRFDSLD 167
Query: 347 TVDCESALNIID*TKQFISLLN*DNI 270
V ES+L ++D + FI+L + D++
Sbjct: 168 AVHNESSLGVVDEPEVFIALFDGDDV 193
>UniRef50_Q6L1B5 Cluster: 30S ribosomal protein S4e; n=1;
Picrophilus torridus|Rep: 30S ribosomal protein S4e -
Picrophilus torridus
Length = 234
Score = 35.9 bits (79), Expect = 1.0
Identities = 20/48 (41%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Frame = +2
Query: 509 KIMDFIKFESGNLCMITGGRNLGLLGTIVSRERKSRFLRHCAH--QGF 646
+I+D +KF GN ITGG ++G + TI S E KS + H +GF
Sbjct: 162 EIVDVLKFAPGNRVFITGGSHVGEIATIKSIEIKSSSGENMVHMNEGF 209
>UniRef50_Q7U147 Cluster: PROBABLE OXIDASE; n=7; Mycobacterium
tuberculosis complex|Rep: PROBABLE OXIDASE -
Mycobacterium bovis
Length = 504
Score = 33.9 bits (74), Expect = 4.1
Identities = 19/44 (43%), Positives = 24/44 (54%)
Frame = -3
Query: 143 PGASTRATCGDRLTVSVHTHRQVCPTSMLWERLSASNAS*GLAP 12
PG RAT GD + VSV T+R PTS+ W ++ N G P
Sbjct: 93 PGPLIRATVGDEIVVSV-TNRLGDPTSVHWHGIALRNDMDGTEP 135
>UniRef50_A6E8K7 Cluster: Putative uncharacterized protein; n=1;
Pedobacter sp. BAL39|Rep: Putative uncharacterized
protein - Pedobacter sp. BAL39
Length = 195
Score = 33.9 bits (74), Expect = 4.1
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Frame = -2
Query: 198 FQDSFPVKAYFRRFLRKITRGKHSRNLWGPVDGLGAYTPPSLSNIHALGAFKRFK---CF 28
F F KA FR+ +RK+ G+H+ +D A+T PSL H KR++ F
Sbjct: 11 FLGRFFFKARFRKLIRKL--GRHTEVYLVDIDNTLAHTWPSLQQRHYSAENKRYRSLPIF 68
Query: 27 LGPRAML 7
+G R+ L
Sbjct: 69 IGMRSYL 75
>UniRef50_Q8N844 Cluster: CDNA FLJ40027 fis, clone STOMA2008614;
n=1; Homo sapiens|Rep: CDNA FLJ40027 fis, clone
STOMA2008614 - Homo sapiens (Human)
Length = 181
Score = 33.9 bits (74), Expect = 4.1
Identities = 23/59 (38%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Frame = -2
Query: 723 KPNFTPLGPCRLWTRLLTSWPR---FFPWNP*CAQCRRNRDFLSRDTMVPKSPKLRPPV 556
KP + PL PC +W RLL+ R FF W P CA R+ S P+ PPV
Sbjct: 106 KPRY-PLVPCVVWQRLLSGRVRSNFFFQW-PLCASPGHLRELKSYRYKGDPPPRKAPPV 162
>UniRef50_Q6FE15 Cluster: Component of chemotactic signal
transduction system; n=1; Acinetobacter sp. ADP1|Rep:
Component of chemotactic signal transduction system -
Acinetobacter sp. (strain ADP1)
Length = 1437
Score = 33.1 bits (72), Expect = 7.2
Identities = 17/64 (26%), Positives = 36/64 (56%)
Frame = -1
Query: 652 PVESLMCTMSKEPGFSLAGHDGAQKPQVTASRDHTQVPGLKLDEVHNLVVAMSNWMESLT 473
P+E L+ + +P FS++G DG + P + ++ L +DE ++++ S+ +E +
Sbjct: 788 PIEQLLTLTTPQPAFSVSG-DGVEPPSMHGEWENV----LPVDETNDMIRVSSDLIEKMI 842
Query: 472 LISG 461
+SG
Sbjct: 843 DLSG 846
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 837,556,029
Number of Sequences: 1657284
Number of extensions: 18459840
Number of successful extensions: 49660
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 47563
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49622
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 59090914597
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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