Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30316
(727 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein S4|Schizosacch... 175 4e-45
SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal pro... 175 7e-45
SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein S4|Schizos... 173 2e-44
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 27 3.6
SPAC8C9.06c |||mitochondrial translation regulator |Schizosaccha... 26 6.3
SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce... 25 8.3
>SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein
S4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 262
Score = 175 bits (427), Expect = 4e-45
Identities = 83/151 (54%), Positives = 105/151 (69%)
Frame = +3
Query: 255 PAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTH 434
P GFMDV+S+EKT E FRL+YD+KGRFT+HRIT EEAKYKLCKVKRV G K VP+LVTH
Sbjct: 83 PTGFMDVISVEKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLGAKGVPFLVTH 142
Query: 435 DGRTIRYPDPLIKVNDSIQLDIATTRLWTSSSLSPGTCV*SREAVTWGFWAPSCPARENP 614
DGRTIRYPDPLIKVND+I+L++ T ++ + V G +
Sbjct: 143 DGRTIRYPDPLIKVNDTIKLNLETNKIESFIKFDTSAQVMVTGGRNMGRVGTIVHREHHL 202
Query: 615 GSFDIVHIKDSTGKTLATRLTNVSIIGKGPK 707
GSF+I+H+KD+ + ATRL+NV +IG+ K
Sbjct: 203 GSFEIIHVKDALDREFATRLSNVFVIGEAGK 233
Score = 107 bits (256), Expect = 2e-24
Identities = 45/60 (75%), Positives = 50/60 (83%)
Frame = +2
Query: 11 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 190
M RGPKKHLKR+ AP W+LDKL G YAP+PS GPHK RECLPL++FLRNRLKYAL G E
Sbjct: 1 MVRGPKKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGRE 60
Score = 33.5 bits (73), Expect = 0.031
Identities = 14/24 (58%), Positives = 19/24 (79%)
Frame = +1
Query: 184 KRILKIVKQRLIKVDGKVRTDPTY 255
+ + I+ QRLI+VDGKVRTD T+
Sbjct: 59 REVKAILMQRLIQVDGKVRTDSTF 82
>SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal
protein S4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 262
Score = 175 bits (425), Expect = 7e-45
Identities = 83/151 (54%), Positives = 105/151 (69%)
Frame = +3
Query: 255 PAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTH 434
P GFMDV+S+EKT E FRL+YD+KGRFT+HRIT EEAKYKLCKVKRV G K VP+LVTH
Sbjct: 83 PTGFMDVISVEKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLGAKGVPFLVTH 142
Query: 435 DGRTIRYPDPLIKVNDSIQLDIATTRLWTSSSLSPGTCV*SREAVTWGFWAPSCPARENP 614
DGRTIRYPDPLIKVND+I+L++ T ++ + V G +
Sbjct: 143 DGRTIRYPDPLIKVNDTIKLNLETNKIESFIKFDTSAQVMVTGGRNMGRVGTIVHREHHL 202
Query: 615 GSFDIVHIKDSTGKTLATRLTNVSIIGKGPK 707
GSF+I+H+KD+ + ATRL+NV +IG+ K
Sbjct: 203 GSFEIIHVKDALDREFATRLSNVFVIGETGK 233
Score = 107 bits (256), Expect = 2e-24
Identities = 45/60 (75%), Positives = 50/60 (83%)
Frame = +2
Query: 11 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 190
M RGPKKHLKR+ AP W+LDKL G YAP+PS GPHK RECLPL++FLRNRLKYAL G E
Sbjct: 1 MVRGPKKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGRE 60
Score = 35.1 bits (77), Expect = 0.010
Identities = 15/24 (62%), Positives = 19/24 (79%)
Frame = +1
Query: 184 KRILKIVKQRLIKVDGKVRTDPTY 255
+ + I+ QRLIKVDGKVRTD T+
Sbjct: 59 REVKAILMQRLIKVDGKVRTDSTF 82
>SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein
S4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 262
Score = 173 bits (422), Expect = 2e-44
Identities = 82/151 (54%), Positives = 105/151 (69%)
Frame = +3
Query: 255 PAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTH 434
P GFMDV+S++KT E FRL+YD+KGRFT+HRIT EEAKYKLCKVKRV G K VP+LVTH
Sbjct: 83 PTGFMDVISVDKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLGAKGVPFLVTH 142
Query: 435 DGRTIRYPDPLIKVNDSIQLDIATTRLWTSSSLSPGTCV*SREAVTWGFWAPSCPARENP 614
DGRTIRYPDPLIKVND+I+L++ T ++ + V G +
Sbjct: 143 DGRTIRYPDPLIKVNDTIKLNLETNKIESFIKFDTSAQVMVTGGRNMGRVGTIVHREHHL 202
Query: 615 GSFDIVHIKDSTGKTLATRLTNVSIIGKGPK 707
GSF+I+H+KD+ + ATRL+NV +IG+ K
Sbjct: 203 GSFEIIHVKDALDREFATRLSNVFVIGETGK 233
Score = 107 bits (256), Expect = 2e-24
Identities = 45/60 (75%), Positives = 50/60 (83%)
Frame = +2
Query: 11 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 190
M RGPKKHLKR+ AP W+LDKL G YAP+PS GPHK RECLPL++FLRNRLKYAL G E
Sbjct: 1 MVRGPKKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGRE 60
Score = 35.1 bits (77), Expect = 0.010
Identities = 15/24 (62%), Positives = 19/24 (79%)
Frame = +1
Query: 184 KRILKIVKQRLIKVDGKVRTDPTY 255
+ + I+ QRLIKVDGKVRTD T+
Sbjct: 59 REVKAILMQRLIKVDGKVRTDSTF 82
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 26.6 bits (56), Expect = 3.6
Identities = 15/62 (24%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Frame = +3
Query: 270 DVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYL-VTHDGRT 446
+V S+EK N++F + Y+V + + + K+ ++ ++ KNVP + V H
Sbjct: 1718 NVSSLEKCNQIFSIFYEVFFQHPSTNVYANDEGIKIGALQIISFFLKNVPEITVQHQTEM 1777
Query: 447 IR 452
++
Sbjct: 1778 LK 1779
>SPAC8C9.06c |||mitochondrial translation regulator
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 931
Score = 25.8 bits (54), Expect = 6.3
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +1
Query: 274 LSQLRRLMNCFV*SMMLRADSQSTVSPLRRLSTSCVK 384
LS+++ L+NCF+ S + D + LR L +K
Sbjct: 424 LSRIKHLLNCFLNSSTVSLDVSMVLELLRDLKKKKIK 460
>SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1261
Score = 25.4 bits (53), Expect = 8.3
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = -3
Query: 365 SLLRGDTVDCESALNIID*TKQ 300
S RGDT D +ALNI + TK+
Sbjct: 898 STRRGDTDDATTALNIFEETKR 919
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,378,373
Number of Sequences: 5004
Number of extensions: 74222
Number of successful extensions: 201
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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