Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30316
(727 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_03_0277 + 14496298-14496300,14496875-14496952,14497061-144972... 151 5e-37
05_04_0058 + 17548945-17548947,17549234-17549281,17549618-175496... 150 1e-36
02_01_0047 - 316960-317397,317647-317744,317837-318017,318122-31... 150 1e-36
09_04_0672 + 19367940-19368203,19368307-19368399,19368711-19370078 31 0.93
06_03_0124 - 16942492-16945032,16945478-16945572,16945966-169460... 31 1.2
04_03_1015 - 21734381-21736534 29 2.8
10_07_0015 + 11813465-11813479,11814342-11814422,11814842-118149... 29 3.8
02_04_0117 + 19914704-19915830,19916575-19916860,19917047-19918258 29 3.8
12_02_0735 - 22636835-22639502,22639755-22640734 29 5.0
12_02_0513 - 19906147-19906271,19906470-19906791,19907091-199076... 29 5.0
03_02_0939 + 12571052-12571173,12571219-12571309,12571413-125715... 29 5.0
02_01_0285 - 1913425-1914065,1914094-1914177,1914249-1915140,191... 28 6.6
09_06_0198 - 21496692-21496991,21497111-21497258,21497341-214975... 28 8.7
>01_03_0277 +
14496298-14496300,14496875-14496952,14497061-14497241,
14497348-14497445,14497542-14497979
Length = 265
Score = 151 bits (366), Expect = 5e-37
Identities = 73/151 (48%), Positives = 96/151 (63%)
Frame = +3
Query: 255 PAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTH 434
PAGFMDV+SI KT E +RL+YD KGRF + + E+AK+KLCKV+ V G K +PYL T+
Sbjct: 83 PAGFMDVISIPKTGENYRLLYDTKGRFRLQSVKDEDAKFKLCKVRSVQFGQKGIPYLNTY 142
Query: 435 DGRTIRYPDPLIKVNDSIQLDIATTRLWTSSSLSPGTCV*SREAVTWGFWAPSCPARENP 614
DGRTIRYPDPLIK ND+I++D+ T ++ G V G ++
Sbjct: 143 DGRTIRYPDPLIKANDTIKIDLETNKIVDFIKFDVGNVVMVTGGRNTGRVGVIKNREKHK 202
Query: 615 GSFDIVHIKDSTGKTLATRLTNVSIIGKGPK 707
GSF+ +H++D+ G ATRL NV IGKG K
Sbjct: 203 GSFETIHVEDALGHAFATRLGNVFTIGKGNK 233
Score = 108 bits (260), Expect = 4e-24
Identities = 47/60 (78%), Positives = 53/60 (88%)
Frame = +2
Query: 11 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 190
MARG KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPL++ +RNRLKYALT E
Sbjct: 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYRE 60
Score = 32.7 bits (71), Expect = 0.31
Identities = 13/24 (54%), Positives = 18/24 (75%)
Frame = +1
Query: 184 KRILKIVKQRLIKVDGKVRTDPTY 255
+ ++ I+ QR + VDGKVRTD TY
Sbjct: 59 REVISILMQRHVLVDGKVRTDKTY 82
>05_04_0058 +
17548945-17548947,17549234-17549281,17549618-17549695,
17549952-17550132,17550223-17550320,17550827-17551258
Length = 279
Score = 150 bits (364), Expect = 1e-36
Identities = 74/151 (49%), Positives = 96/151 (63%)
Frame = +3
Query: 255 PAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTH 434
PAGFMDVVSI KT E FRL+YD KGRF +H I E+AK+KLCKV+ V G K +P+L T+
Sbjct: 99 PAGFMDVVSIAKTGENFRLLYDTKGRFRLHSIKDEDAKFKLCKVRSVQFGQKGIPFLNTN 158
Query: 435 DGRTIRYPDPLIKVNDSIQLDIATTRLWTSSSLSPGTCV*SREAVTWGFWAPSCPARENP 614
DGRTIRYPDPLIK ND+I++D+ T ++ G V G ++
Sbjct: 159 DGRTIRYPDPLIKANDTIKIDLETNKIVDFIKFDVGNIVMVTGGRNTGRVGVIKSREKHK 218
Query: 615 GSFDIVHIKDSTGKTLATRLTNVSIIGKGPK 707
GSF+ +H++D+ G ATR+ NV IGK K
Sbjct: 219 GSFETIHVEDALGHQFATRMGNVFTIGKERK 249
Score = 105 bits (253), Expect = 3e-23
Identities = 46/59 (77%), Positives = 51/59 (86%)
Frame = +2
Query: 14 ARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 190
ARG KKHLKRLNAP WMLDKLGG +AP+PS+GPHK RECLPL++ LRNRLKYALT E
Sbjct: 18 ARGLKKHLKRLNAPSHWMLDKLGGAFAPKPSSGPHKARECLPLILILRNRLKYALTYRE 76
Score = 33.1 bits (72), Expect = 0.23
Identities = 13/24 (54%), Positives = 18/24 (75%)
Frame = +1
Query: 184 KRILKIVKQRLIKVDGKVRTDPTY 255
+ ++ I+ QR + VDGKVRTD TY
Sbjct: 75 REVISILMQRHVMVDGKVRTDKTY 98
>02_01_0047 -
316960-317397,317647-317744,317837-318017,318122-318199,
319023-319025
Length = 265
Score = 150 bits (363), Expect = 1e-36
Identities = 72/151 (47%), Positives = 96/151 (63%)
Frame = +3
Query: 255 PAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTH 434
PAGFMDV+SI KT E +RL+YD KGRF + + E+AK+KLCKV+ V G K +PYL T+
Sbjct: 83 PAGFMDVISIPKTGENYRLLYDTKGRFRLQSVKDEDAKFKLCKVRSVQFGQKGIPYLNTY 142
Query: 435 DGRTIRYPDPLIKVNDSIQLDIATTRLWTSSSLSPGTCV*SREAVTWGFWAPSCPARENP 614
DGRTIRYPDP+IK ND+I++D+ T ++ G V G ++
Sbjct: 143 DGRTIRYPDPIIKANDTIKIDLETNKIVDFIKFDVGNVVMVTGGRNTGRVGVIKNREKHK 202
Query: 615 GSFDIVHIKDSTGKTLATRLTNVSIIGKGPK 707
GSF+ +H++D+ G ATRL NV IGKG K
Sbjct: 203 GSFETIHVEDALGHQFATRLGNVFTIGKGNK 233
Score = 108 bits (260), Expect = 4e-24
Identities = 47/60 (78%), Positives = 53/60 (88%)
Frame = +2
Query: 11 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 190
MARG KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPL++ +RNRLKYALT E
Sbjct: 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYRE 60
Score = 32.7 bits (71), Expect = 0.31
Identities = 13/24 (54%), Positives = 18/24 (75%)
Frame = +1
Query: 184 KRILKIVKQRLIKVDGKVRTDPTY 255
+ ++ I+ QR + VDGKVRTD TY
Sbjct: 59 REVISILMQRHVLVDGKVRTDKTY 82
>09_04_0672 + 19367940-19368203,19368307-19368399,19368711-19370078
Length = 574
Score = 31.1 bits (67), Expect = 0.93
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = -3
Query: 155 SGKSPGASTRATCGDRLTVSVHTHRQVCPTSMLW 54
+G+SPG + RA GD L V+VH T++ W
Sbjct: 50 NGESPGPTIRAAQGDTLVVTVHNMLDTENTAIHW 83
>06_03_0124 -
16942492-16945032,16945478-16945572,16945966-16946076,
16946142-16946229
Length = 944
Score = 30.7 bits (66), Expect = 1.2
Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Frame = +1
Query: 148 FPEESSEVCFDRKRILKIVKQRLIKVD--GKVRTDPTYLLDLWMLSQLRRLMNC 303
FP + ++C ++++ + ++ G R+ PTYL+ LWM+S L+ C
Sbjct: 95 FPIQIMQMCGWLLKVVRWENLNCVHMEAHGNRRSSPTYLVMLWMISVASLLITC 148
>04_03_1015 - 21734381-21736534
Length = 717
Score = 29.5 bits (63), Expect = 2.8
Identities = 19/42 (45%), Positives = 26/42 (61%)
Frame = +1
Query: 367 STSCVKSSVWRPDLRMFRTW*RMMAAPSAIQTHLSKSTIPSS 492
S+S V S+V+ LR+ T R +AA I THL+ ST PS+
Sbjct: 38 SSSQVPSAVYASLLRL-ATSHRSLAAARRIATHLASSTAPST 78
>10_07_0015 +
11813465-11813479,11814342-11814422,11814842-11814951,
11815553-11815608,11816086-11816180,11817021-11817126,
11817261-11817577,11817666-11817848,11817976-11818173,
11819029-11819346,11819721-11819813
Length = 523
Score = 29.1 bits (62), Expect = 3.8
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +1
Query: 127 RVLAPGDFPEESSEVCFDRKRILKIVK 207
+VL G P+ESSEV D ILK+++
Sbjct: 468 KVLDEGSSPQESSEVTCDENAILKVME 494
>02_04_0117 + 19914704-19915830,19916575-19916860,19917047-19918258
Length = 874
Score = 29.1 bits (62), Expect = 3.8
Identities = 17/43 (39%), Positives = 22/43 (51%)
Frame = -2
Query: 168 FRRFLRKITRGKHSRNLWGPVDGLGAYTPPSLSNIHALGAFKR 40
F L ++ + L G G+G Y PPSLSN + AFKR
Sbjct: 35 FNVALNRLPASAGASPLLGHGHGVGVYYPPSLSNA-LVAAFKR 76
>12_02_0735 - 22636835-22639502,22639755-22640734
Length = 1215
Score = 28.7 bits (61), Expect = 5.0
Identities = 19/54 (35%), Positives = 29/54 (53%)
Frame = -1
Query: 700 PLPIMDTFVNLVAKVFPVESLMCTMSKEPGFSLAGHDGAQKPQVTASRDHTQVP 539
PL +T ++++A +PVE L C +S + G L+ A+ TAS T VP
Sbjct: 425 PLVTANTILSILAADYPVEKLACYLSDDGGALLSFEALAE----TASFARTWVP 474
>12_02_0513 -
19906147-19906271,19906470-19906791,19907091-19907695,
19908569-19908617
Length = 366
Score = 28.7 bits (61), Expect = 5.0
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = -1
Query: 127 AQLVGTG*RSRCIHTAK-FVQHPCFGSV*ALQMLLRASR 14
++ V G R+RC+H A V+ P FG + ++L ASR
Sbjct: 39 SRAVKAGRRARCVHHASALVRPPSFGRLAMFVLILSASR 77
>03_02_0939 +
12571052-12571173,12571219-12571309,12571413-12571512,
12571726-12571807,12571897-12571953,12572632-12572713,
12572792-12572884,12573984-12574047,12574161-12574246,
12574329-12574430,12574526-12574609,12574885-12574945,
12575010-12575091,12575173-12575250,12575867-12575931,
12576108-12576185,12576278-12576450
Length = 499
Score = 28.7 bits (61), Expect = 5.0
Identities = 21/73 (28%), Positives = 39/73 (53%), Gaps = 3/73 (4%)
Frame = -1
Query: 679 FVNLVAKVFPVESLMCTMS--KEPGFSLAGHDGAQKPQVTASRDHTQVPGLKLDE-VHNL 509
F +LVA +FP+ MCT++ K+ ++A H +K +AS D+ + L E +HN+
Sbjct: 336 FWDLVAVIFPIGRTMCTLTHHKKSVRAMALHP-KEKSFASASADNIKKFSLPKGEFLHNM 394
Query: 508 VVAMSNWMESLTL 470
+ + S+ +
Sbjct: 395 LSQQKTIINSMAV 407
>02_01_0285 -
1913425-1914065,1914094-1914177,1914249-1915140,
1915205-1915249,1915335-1915870,1915987-1916041
Length = 750
Score = 28.3 bits (60), Expect = 6.6
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +3
Query: 303 FRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGP 407
+ LIYD++G + + P++A L ++ V T P
Sbjct: 147 YALIYDIQGSLALPILDPDDASSPLAVLELVTTAP 181
>09_06_0198 -
21496692-21496991,21497111-21497258,21497341-21497578,
21497679-21497889,21497977-21498170,21498263-21498364,
21498525-21499879,21501193-21501494,21501600-21501750,
21501838-21502102,21502155-21502362,21502467-21502660,
21502749-21502850,21503481-21503680,21504010-21504846,
21505806-21506107,21506209-21506359,21506447-21506684,
21506764-21506971,21507078-21507271,21507322-21507462,
21513484-21514811,21515923-21516227,21516331-21516481,
21516570-21516807,21516881-21517088,21517197-21517366,
21517451-21517549,21517708-21519029,21521601-21521683
Length = 3314
Score = 27.9 bits (59), Expect = 8.7
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +3
Query: 585 APSCPARENPGSFDIVHIKDSTGKTLAT-RLTNV 683
APSCP S +I +KD+T ++ T LTN+
Sbjct: 823 APSCPGHFTQRSSEIEQMKDNTQNSMNTFTLTNI 856
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,157,035
Number of Sequences: 37544
Number of extensions: 529702
Number of successful extensions: 1467
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1398
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1461
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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