Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30316
(727 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_53271| Best HMM Match : No HMM Matches (HMM E-Value=.) 173 1e-43
SB_44750| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_19274| Best HMM Match : SET (HMM E-Value=2.7e-06) 30 1.7
SB_46368| Best HMM Match : DUF156 (HMM E-Value=6.5) 28 6.7
SB_49038| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.9
SB_40605| Best HMM Match : Prion_octapep (HMM E-Value=9.3) 28 8.9
SB_12628| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.9
SB_6740| Best HMM Match : RVT_1 (HMM E-Value=4.5e-22) 28 8.9
>SB_53271| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 687
Score = 173 bits (421), Expect = 1e-43
Identities = 85/151 (56%), Positives = 103/151 (68%)
Frame = +3
Query: 255 PAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTH 434
PAGFMDVV+I+KT E FRL+YDVKGRF +HRIT EEAKYKL +V+RV G K VPY+VTH
Sbjct: 507 PAGFMDVVTIDKTGENFRLLYDVKGRFAVHRITAEEAKYKLGRVRRVDVGAKGVPYIVTH 566
Query: 435 DGRTIRYPDPLIKVNDSIQLDIATTRLWTSSSLSPGTCV*SREAVTWGFWAPSCPARENP 614
D RTIRYPDP IKVND++ +DI T ++ G G ++
Sbjct: 567 DARTIRYPDPNIKVNDTVVIDIKTGKVIDYIKFDTGNMAMVVGGRNMGRVGMVTHREKHA 626
Query: 615 GSFDIVHIKDSTGKTLATRLTNVSIIGKGPK 707
GSFDIVH+KD+TG ATRLTN+ +IGKG K
Sbjct: 627 GSFDIVHVKDATGHQFATRLTNIFVIGKGNK 657
Score = 123 bits (296), Expect = 2e-28
Identities = 56/76 (73%), Positives = 63/76 (82%)
Frame = +2
Query: 11 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 190
MARGPKKH+KRLNAPK WMLDKL GV+APRPSTGPHKLRECLPL+IFLRNRLKYAL G E
Sbjct: 425 MARGPKKHMKRLNAPKHWMLDKLSGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALNGEE 484
Query: 191 S*KL*NNAS*RLMGKL 238
K+ ++ GK+
Sbjct: 485 VKKIVKQRLIKIDGKV 500
Score = 41.9 bits (94), Expect = 5e-04
Identities = 18/24 (75%), Positives = 21/24 (87%)
Frame = +1
Query: 184 KRILKIVKQRLIKVDGKVRTDPTY 255
+ + KIVKQRLIK+DGKVRTD TY
Sbjct: 483 EEVKKIVKQRLIKIDGKVRTDTTY 506
>SB_44750| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2190
Score = 30.3 bits (65), Expect = 1.7
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +2
Query: 635 HQGFHGKNLGHEVNKRVHNRQGPKGVKFG 721
H+ HGK LG++V ++HNR G G
Sbjct: 781 HKQAHGKLLGYKVQYQIHNRSASLGTSNG 809
>SB_19274| Best HMM Match : SET (HMM E-Value=2.7e-06)
Length = 309
Score = 30.3 bits (65), Expect = 1.7
Identities = 20/43 (46%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Frame = -2
Query: 630 QCRRNRDFLSR-DTMVP-KSPKLRPPVIIHKFPDS-NLMKSII 511
+C+R RD S D VP KSP+ PP+ FPD L KS I
Sbjct: 47 RCKRRRDSESSIDGTVPVKSPRSSPPLAAFVFPDEVRLCKSSI 89
>SB_46368| Best HMM Match : DUF156 (HMM E-Value=6.5)
Length = 203
Score = 28.3 bits (60), Expect = 6.7
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = -2
Query: 153 RKITRGKHSRNLWGPVDGLGAYTPPSLSNIHALGAF-KRFKCFLGPRAMLDK 1
RK +R N++G ++GLG+ PP + I F K K F PR K
Sbjct: 60 RKRSRSLPRTNVFGTLNGLGSPPPPRDNRIDEYAEFTKSQKSFTFPRRSKQK 111
>SB_49038| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 348
Score = 27.9 bits (59), Expect = 8.9
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +1
Query: 592 RVPREKIPVPSTLCTSRIP 648
RVP K+P+PSTL + R P
Sbjct: 328 RVPAPKLPIPSTLSSCRHP 346
>SB_40605| Best HMM Match : Prion_octapep (HMM E-Value=9.3)
Length = 586
Score = 27.9 bits (59), Expect = 8.9
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = +2
Query: 500 CNYKIMDFIKFESGNLCMITGGRNLGLLGTIVSRERKSRFLR 625
CN I+ +IK ESG + GG+ + ++ ++ S +R
Sbjct: 447 CNSLILWYIKIESGKGFLHKGGKRIQQFSNVIGAKKSSATVR 488
>SB_12628| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1163
Score = 27.9 bits (59), Expect = 8.9
Identities = 22/91 (24%), Positives = 38/91 (41%)
Frame = +1
Query: 124 ARVLAPGDFPEESSEVCFDRKRILKIVKQRLIKVDGKVRTDPTYLLDLWMLSQLRRLMNC 303
A++ +P DF + S + RIL++ + + T+ L +L L +
Sbjct: 250 AKLSSPDDFMDHPSTI-----RILEVCSNTTPCRELRPVTEGQVLKELHSLKPEKAAGCD 304
Query: 304 FV*SMMLRADSQSTVSPLRRLSTSCVKSSVW 396
+ +L+ PL L SC+KS VW
Sbjct: 305 AIPPKLLKIGETELAKPLTSLFNSCIKSKVW 335
>SB_6740| Best HMM Match : RVT_1 (HMM E-Value=4.5e-22)
Length = 884
Score = 27.9 bits (59), Expect = 8.9
Identities = 22/91 (24%), Positives = 38/91 (41%)
Frame = +1
Query: 124 ARVLAPGDFPEESSEVCFDRKRILKIVKQRLIKVDGKVRTDPTYLLDLWMLSQLRRLMNC 303
A++ +P DF + S + RIL++ + + T+ L +L L +
Sbjct: 110 AKLSSPDDFMDHPSTI-----RILEVCSNTTPCRELRPVTEGQVLKELHSLKPEKAAGCD 164
Query: 304 FV*SMMLRADSQSTVSPLRRLSTSCVKSSVW 396
+ +L+ PL L SC+KS VW
Sbjct: 165 AIPPKLLKIGETELAKPLTSLFNSCIKSKVW 195
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,170,972
Number of Sequences: 59808
Number of extensions: 599260
Number of successful extensions: 1443
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1311
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1440
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1937927537
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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