Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30316
(727 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
D16257-1|BAA03786.1| 261|Drosophila melanogaster ribosomal prot... 187 1e-47
BT011369-1|AAR96161.1| 261|Drosophila melanogaster RE57333p pro... 187 1e-47
AE014296-2240|AAF49846.1| 261|Drosophila melanogaster CG11276-P... 187 1e-47
AE014296-2239|AAF49847.1| 261|Drosophila melanogaster CG11276-P... 187 1e-47
AF114160-1|AAD26161.2| 2077|Drosophila melanogaster adherin Nipp... 29 8.5
AE013599-26|EAA46003.3| 2077|Drosophila melanogaster CG17704-PF,... 29 8.5
AE013599-25|EAA46004.3| 2077|Drosophila melanogaster CG17704-PE,... 29 8.5
>D16257-1|BAA03786.1| 261|Drosophila melanogaster ribosomal protein
S4 protein.
Length = 261
Score = 187 bits (456), Expect = 1e-47
Identities = 91/154 (59%), Positives = 105/154 (68%)
Frame = +3
Query: 246 PYLPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYL 425
P PAG+MDV+++EKT E FRL+YDVKGRF IHRI+ EEAKYKLCKVK+ G K VP+L
Sbjct: 80 PTYPAGYMDVITLEKTGEFFRLVYDVKGRFVIHRISAEEAKYKLCKVKKTQLGAKGVPFL 139
Query: 426 VTHDGRTIRYPDPLIKVNDSIQLDIATTRLWTSSSLSPGTCV*SREAVTWGFWAPSCPAR 605
VTHDGRTIRYPDPLI NDS+Q+DIA+ ++ G G
Sbjct: 140 VTHDGRTIRYPDPLIHANDSVQVDIASGKITDYIKFDSGNLCMITGGRNLGRVGTVVNRE 199
Query: 606 ENPGSFDIVHIKDSTGKTLATRLTNVSIIGKGPK 707
+PGSFDIVHIKDS G ATRLTNV IIGKG K
Sbjct: 200 RHPGSFDIVHIKDSQGHVFATRLTNVFIIGKGNK 233
Score = 117 bits (282), Expect = 1e-26
Identities = 56/76 (73%), Positives = 62/76 (81%)
Frame = +2
Query: 11 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 190
MARGPKKHLKRL APKAWMLDKLGGV+APRPSTGPHKLRE LPL+ FLRNRLKYAL G E
Sbjct: 1 MARGPKKHLKRLAAPKAWMLDKLGGVFAPRPSTGPHKLRESLPLLTFLRNRLKYALNGAE 60
Query: 191 S*KL*NNAS*RLMGKL 238
K+ ++ GK+
Sbjct: 61 VTKIVMQRLVKVYGKV 76
Score = 39.1 bits (87), Expect = 0.006
Identities = 17/22 (77%), Positives = 19/22 (86%)
Frame = +1
Query: 190 ILKIVKQRLIKVDGKVRTDPTY 255
+ KIV QRL+KV GKVRTDPTY
Sbjct: 61 VTKIVMQRLVKVYGKVRTDPTY 82
>BT011369-1|AAR96161.1| 261|Drosophila melanogaster RE57333p
protein.
Length = 261
Score = 187 bits (456), Expect = 1e-47
Identities = 91/154 (59%), Positives = 105/154 (68%)
Frame = +3
Query: 246 PYLPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYL 425
P PAG+MDV+++EKT E FRL+YDVKGRF IHRI+ EEAKYKLCKVK+ G K VP+L
Sbjct: 80 PTYPAGYMDVITLEKTGEFFRLVYDVKGRFVIHRISAEEAKYKLCKVKKTQLGAKGVPFL 139
Query: 426 VTHDGRTIRYPDPLIKVNDSIQLDIATTRLWTSSSLSPGTCV*SREAVTWGFWAPSCPAR 605
VTHDGRTIRYPDPLI NDS+Q+DIA+ ++ G G
Sbjct: 140 VTHDGRTIRYPDPLIHANDSVQVDIASGKITDYIKFDSGNLCMITGGRNLGRVGTVVNRE 199
Query: 606 ENPGSFDIVHIKDSTGKTLATRLTNVSIIGKGPK 707
+PGSFDIVHIKDS G ATRLTNV IIGKG K
Sbjct: 200 RHPGSFDIVHIKDSQGHVFATRLTNVFIIGKGNK 233
Score = 119 bits (286), Expect = 5e-27
Identities = 55/64 (85%), Positives = 58/64 (90%)
Frame = +2
Query: 11 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 190
MARGPKKHLKRL APKAWMLDKLGGV+APRPSTGPHKLRE LPL+IFLRNRLKYAL G E
Sbjct: 1 MARGPKKHLKRLAAPKAWMLDKLGGVFAPRPSTGPHKLRESLPLLIFLRNRLKYALNGAE 60
Query: 191 S*KL 202
K+
Sbjct: 61 VTKI 64
Score = 42.7 bits (96), Expect = 5e-04
Identities = 18/22 (81%), Positives = 20/22 (90%)
Frame = +1
Query: 190 ILKIVKQRLIKVDGKVRTDPTY 255
+ KIV QRL+KVDGKVRTDPTY
Sbjct: 61 VTKIVMQRLVKVDGKVRTDPTY 82
>AE014296-2240|AAF49846.1| 261|Drosophila melanogaster CG11276-PB,
isoform B protein.
Length = 261
Score = 187 bits (456), Expect = 1e-47
Identities = 91/154 (59%), Positives = 105/154 (68%)
Frame = +3
Query: 246 PYLPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYL 425
P PAG+MDV+++EKT E FRL+YDVKGRF IHRI+ EEAKYKLCKVK+ G K VP+L
Sbjct: 80 PTYPAGYMDVITLEKTGEFFRLVYDVKGRFVIHRISAEEAKYKLCKVKKTQLGAKGVPFL 139
Query: 426 VTHDGRTIRYPDPLIKVNDSIQLDIATTRLWTSSSLSPGTCV*SREAVTWGFWAPSCPAR 605
VTHDGRTIRYPDPLI NDS+Q+DIA+ ++ G G
Sbjct: 140 VTHDGRTIRYPDPLIHANDSVQVDIASGKITDYIKFDSGNLCMITGGRNLGRVGTVVNRE 199
Query: 606 ENPGSFDIVHIKDSTGKTLATRLTNVSIIGKGPK 707
+PGSFDIVHIKDS G ATRLTNV IIGKG K
Sbjct: 200 RHPGSFDIVHIKDSQGHVFATRLTNVFIIGKGNK 233
Score = 119 bits (286), Expect = 5e-27
Identities = 55/64 (85%), Positives = 58/64 (90%)
Frame = +2
Query: 11 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 190
MARGPKKHLKRL APKAWMLDKLGGV+APRPSTGPHKLRE LPL+IFLRNRLKYAL G E
Sbjct: 1 MARGPKKHLKRLAAPKAWMLDKLGGVFAPRPSTGPHKLRESLPLLIFLRNRLKYALNGAE 60
Query: 191 S*KL 202
K+
Sbjct: 61 VTKI 64
Score = 42.7 bits (96), Expect = 5e-04
Identities = 18/22 (81%), Positives = 20/22 (90%)
Frame = +1
Query: 190 ILKIVKQRLIKVDGKVRTDPTY 255
+ KIV QRL+KVDGKVRTDPTY
Sbjct: 61 VTKIVMQRLVKVDGKVRTDPTY 82
>AE014296-2239|AAF49847.1| 261|Drosophila melanogaster CG11276-PA,
isoform A protein.
Length = 261
Score = 187 bits (456), Expect = 1e-47
Identities = 91/154 (59%), Positives = 105/154 (68%)
Frame = +3
Query: 246 PYLPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYL 425
P PAG+MDV+++EKT E FRL+YDVKGRF IHRI+ EEAKYKLCKVK+ G K VP+L
Sbjct: 80 PTYPAGYMDVITLEKTGEFFRLVYDVKGRFVIHRISAEEAKYKLCKVKKTQLGAKGVPFL 139
Query: 426 VTHDGRTIRYPDPLIKVNDSIQLDIATTRLWTSSSLSPGTCV*SREAVTWGFWAPSCPAR 605
VTHDGRTIRYPDPLI NDS+Q+DIA+ ++ G G
Sbjct: 140 VTHDGRTIRYPDPLIHANDSVQVDIASGKITDYIKFDSGNLCMITGGRNLGRVGTVVNRE 199
Query: 606 ENPGSFDIVHIKDSTGKTLATRLTNVSIIGKGPK 707
+PGSFDIVHIKDS G ATRLTNV IIGKG K
Sbjct: 200 RHPGSFDIVHIKDSQGHVFATRLTNVFIIGKGNK 233
Score = 119 bits (286), Expect = 5e-27
Identities = 55/64 (85%), Positives = 58/64 (90%)
Frame = +2
Query: 11 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 190
MARGPKKHLKRL APKAWMLDKLGGV+APRPSTGPHKLRE LPL+IFLRNRLKYAL G E
Sbjct: 1 MARGPKKHLKRLAAPKAWMLDKLGGVFAPRPSTGPHKLRESLPLLIFLRNRLKYALNGAE 60
Query: 191 S*KL 202
K+
Sbjct: 61 VTKI 64
Score = 42.7 bits (96), Expect = 5e-04
Identities = 18/22 (81%), Positives = 20/22 (90%)
Frame = +1
Query: 190 ILKIVKQRLIKVDGKVRTDPTY 255
+ KIV QRL+KVDGKVRTDPTY
Sbjct: 61 VTKIVMQRLVKVDGKVRTDPTY 82
>AF114160-1|AAD26161.2| 2077|Drosophila melanogaster adherin Nipped-B
protein.
Length = 2077
Score = 28.7 bits (61), Expect = 8.5
Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Frame = -3
Query: 446 GAAIMRY-QVRNILRSGRH-TLDFTQLVLSLLRGDTVDCESALNIID*TKQFISL 288
G ++RY + I +S R +LD+ +V + LR DTV+ +NIID Q I L
Sbjct: 888 GTMLVRYVSDKGIEQSIRLVSLDYLGIVAARLRKDTVESRCRVNIIDSMIQSIKL 942
>AE013599-26|EAA46003.3| 2077|Drosophila melanogaster CG17704-PF,
isoform F protein.
Length = 2077
Score = 28.7 bits (61), Expect = 8.5
Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Frame = -3
Query: 446 GAAIMRY-QVRNILRSGRH-TLDFTQLVLSLLRGDTVDCESALNIID*TKQFISL 288
G ++RY + I +S R +LD+ +V + LR DTV+ +NIID Q I L
Sbjct: 888 GTMLVRYVSDKGIEQSIRLVSLDYLGIVAARLRKDTVESRCRVNIIDSMIQSIKL 942
>AE013599-25|EAA46004.3| 2077|Drosophila melanogaster CG17704-PE,
isoform E protein.
Length = 2077
Score = 28.7 bits (61), Expect = 8.5
Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Frame = -3
Query: 446 GAAIMRY-QVRNILRSGRH-TLDFTQLVLSLLRGDTVDCESALNIID*TKQFISL 288
G ++RY + I +S R +LD+ +V + LR DTV+ +NIID Q I L
Sbjct: 888 GTMLVRYVSDKGIEQSIRLVSLDYLGIVAARLRKDTVESRCRVNIIDSMIQSIKL 942
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 38,019,447
Number of Sequences: 53049
Number of extensions: 880410
Number of successful extensions: 2298
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2290
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3252477558
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -