Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30316
(727 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024780-6|AAF60569.1| 259|Caenorhabditis elegans Ribosomal pro... 158 3e-39
Z69902-11|CAA93766.2| 935|Caenorhabditis elegans Hypothetical p... 32 0.36
AL033535-1|CAB70217.1| 935|Caenorhabditis elegans Hypothetical ... 32 0.36
L12018-5|AAU87822.1| 557|Caenorhabditis elegans Twik family of ... 31 1.1
AC006632-5|AAK85474.1| 202|Caenorhabditis elegans Hypothetical ... 31 1.1
Z81094-7|CAB03153.2| 960|Caenorhabditis elegans Hypothetical pr... 30 1.9
U97189-1|AAC48164.1| 623|Caenorhabditis elegans Hypothetical pr... 30 1.9
AC024792-1|AAK84610.1| 938|Caenorhabditis elegans Importin beta... 28 5.9
>AC024780-6|AAF60569.1| 259|Caenorhabditis elegans Ribosomal
protein, small subunitprotein 4 protein.
Length = 259
Score = 158 bits (384), Expect = 3e-39
Identities = 78/151 (51%), Positives = 97/151 (64%)
Frame = +3
Query: 255 PAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTH 434
P GFMDVV+IE+TNE FR++YD KGR+ +HRI EA +KLCKVK V T K VP L T
Sbjct: 82 PTGFMDVVAIERTNEYFRMLYDTKGRYVVHRIQAAEADFKLCKVKSVRTVNKGVPVLTTT 141
Query: 435 DGRTIRYPDPLIKVNDSIQLDIATTRLWTSSSLSPGTCV*SREAVTWGFWAPSCPARENP 614
DGRTIRYPDP +KVND+I +I+T ++ S PG G P
Sbjct: 142 DGRTIRYPDPHVKVNDTIVFNISTQKITDSVKFEPGNLAYVTGGRNVGRVGIIGHRERLP 201
Query: 615 GSFDIVHIKDSTGKTLATRLTNVSIIGKGPK 707
G+ DI+HIKDS G + ATR++NV +IGKG K
Sbjct: 202 GASDIIHIKDSAGHSFATRISNVFVIGKGNK 232
Score = 101 bits (243), Expect = 4e-22
Identities = 49/74 (66%), Positives = 56/74 (75%)
Frame = +2
Query: 17 RGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNES* 196
RGPKKHLKRL AP WMLDKLGGV+A RP+ GPHKLRE LPL +FLRNRLKYAL E+
Sbjct: 2 RGPKKHLKRLAAPSHWMLDKLGGVFAVRPNPGPHKLRESLPLSLFLRNRLKYALNYTEAK 61
Query: 197 KL*NNAS*RLMGKL 238
K+ R+ GK+
Sbjct: 62 KILTQRVVRVDGKV 75
Score = 28.3 bits (60), Expect = 5.9
Identities = 11/16 (68%), Positives = 15/16 (93%)
Frame = +1
Query: 196 KIVKQRLIKVDGKVRT 243
KI+ QR+++VDGKVRT
Sbjct: 62 KILTQRVVRVDGKVRT 77
>Z69902-11|CAA93766.2| 935|Caenorhabditis elegans Hypothetical
protein C47D12.8 protein.
Length = 935
Score = 32.3 bits (70), Expect = 0.36
Identities = 22/69 (31%), Positives = 30/69 (43%)
Frame = -1
Query: 700 PLPIMDTFVNLVAKVFPVESLMCTMSKEPGFSLAGHDGAQKPQVTASRDHTQVPGLKLDE 521
P P +D ++L A S T S+ + A KP T R TQ+ G+K E
Sbjct: 827 PEPDVDRAISLKADQVECSSQELTDSEASTSTKAKKGKKWKPNPTVIRTLTQIFGIKASE 886
Query: 520 VHNLVVAMS 494
HNL+ S
Sbjct: 887 AHNLLANSS 895
>AL033535-1|CAB70217.1| 935|Caenorhabditis elegans Hypothetical
protein C47D12.8 protein.
Length = 935
Score = 32.3 bits (70), Expect = 0.36
Identities = 22/69 (31%), Positives = 30/69 (43%)
Frame = -1
Query: 700 PLPIMDTFVNLVAKVFPVESLMCTMSKEPGFSLAGHDGAQKPQVTASRDHTQVPGLKLDE 521
P P +D ++L A S T S+ + A KP T R TQ+ G+K E
Sbjct: 827 PEPDVDRAISLKADQVECSSQELTDSEASTSTKAKKGKKWKPNPTVIRTLTQIFGIKASE 886
Query: 520 VHNLVVAMS 494
HNL+ S
Sbjct: 887 AHNLLANSS 895
>L12018-5|AAU87822.1| 557|Caenorhabditis elegans Twik family of
potassium channelsprotein 7 protein.
Length = 557
Score = 30.7 bits (66), Expect = 1.1
Identities = 22/55 (40%), Positives = 28/55 (50%)
Frame = +2
Query: 512 IMDFIKFESGNLCMITGGRNLGLLGTIVSRERKSRFLRHCAHQGFHGKNLGHEVN 676
I D KF S +L + G L L I+SR RK R C H HG +GH++N
Sbjct: 312 IADLGKFLSEHLVWLYGNY-LKLKYLILSRHRKERREHVCEHCHSHG--MGHDMN 363
>AC006632-5|AAK85474.1| 202|Caenorhabditis elegans Hypothetical
protein F28A10.8 protein.
Length = 202
Score = 30.7 bits (66), Expect = 1.1
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Frame = +3
Query: 498 IATTRLWTSSSLSPGTCV*SREAVTWGFWA--PSCPA 602
+A+ LW ++ LSP T + S WGFW+ SCP+
Sbjct: 8 LASLLLWITA-LSPPTVIKSPSLSNWGFWSKVESCPS 43
>Z81094-7|CAB03153.2| 960|Caenorhabditis elegans Hypothetical
protein F58G11.2 protein.
Length = 960
Score = 29.9 bits (64), Expect = 1.9
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +2
Query: 635 HQGFHGKNLGHEVNKRVHNRQGPKGVKFGFR 727
HQG HG + G + R H+R G ++G R
Sbjct: 62 HQGNHGNSYGRREDDRSHSRDNHGGSRYGER 92
>U97189-1|AAC48164.1| 623|Caenorhabditis elegans Hypothetical
protein C48B6.4 protein.
Length = 623
Score = 29.9 bits (64), Expect = 1.9
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 6/50 (12%)
Frame = +3
Query: 327 GRFTIHRITPEEAKYKLCKVKRVATGPKNVP-----YLVTHDGRTIR-YP 458
G+ + R+T E Y+ CK+++ A K VP Y+V H R I+ YP
Sbjct: 302 GQIIVRRLTDPEYPYRHCKIQKFAVRCKLVPENYGWYVVWHCQRDIQEYP 351
>AC024792-1|AAK84610.1| 938|Caenorhabditis elegans Importin beta
family protein 5 protein.
Length = 938
Score = 28.3 bits (60), Expect = 5.9
Identities = 16/55 (29%), Positives = 23/55 (41%)
Frame = -1
Query: 484 ESLTLISGSG*RMVRPSCVTKYGTFLGPVATRLTLHNLYLASSGVIRWIVNLPLT 320
E ++ + G V P C Y PVA + H Y A + ++R N P T
Sbjct: 868 EQASMYNAEG-EFVNPFCRLSYAPKQPPVAANIANHKAYFAQAVLVRGPGNCPET 921
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,948,254
Number of Sequences: 27780
Number of extensions: 429511
Number of successful extensions: 1052
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 983
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1050
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1708383636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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