Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30316
         (727 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    27   0.18 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              25   0.73 
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    23   2.2  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    22   5.1  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    21   9.0  

>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 27.1 bits (57), Expect = 0.18
 Identities = 11/33 (33%), Positives = 22/33 (66%)
 Frame = -3

Query: 365 SLLRGDTVDCESALNIID*TKQFISLLN*DNIH 267
           SLL+ +TV C+ A++++      + +++ DNIH
Sbjct: 381 SLLKENTVTCQEAMHMLKNADSQLLVISDDNIH 413


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 25.0 bits (52), Expect = 0.73
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = +2

Query: 635  HQGFHGKNLGHEVNKRVHNRQGPKGV 712
            H G  G  +GH  N   H+R G + +
Sbjct: 1755 HSGTMGPPVGHPTNASAHSRSGSQSM 1780


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 17/63 (26%), Positives = 30/63 (47%)
 Frame = -3

Query: 476 DFDKWVWIADGAAIMRYQVRNILRSGRHTLDFTQLVLSLLRGDTVDCESALNIID*TKQF 297
           D    +WI  G  +M +    + R G+  +  T L+ ++L    + CE  +NI    K +
Sbjct: 57  DVHVMIWIGFGF-LMTF----LRRYGQSAVGLTFLLGAILVQVAIICEGVMNIQKDNKSY 111

Query: 296 ISL 288
           +SL
Sbjct: 112 LSL 114


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -2

Query: 171 YFRRFLRKITRGKHSRNLWGPVDGLGAYTPPSLS 70
           Y R  +R  T  +H ++    +DG+G Y   S S
Sbjct: 83  YNRMDMRNATYYQHQQDHGSGMDGMGGYRSASPS 116


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = +1

Query: 49  RSQSMDVGQTWRCVCTETVNRSPQVARVLAPGDFPE 156
           +S++ DV ++WR +  E  NR+    R++    + E
Sbjct: 261 QSETYDVLRSWRNLMDEHSNRTNSDPRMILTEAYTE 296


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 230,367
Number of Sequences: 438
Number of extensions: 5512
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22535775
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)