Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30316
(727 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g58420.1 68418.m07315 40S ribosomal protein S4 (RPS4D) riboso... 161 4e-40
At5g07090.1 68418.m00804 40S ribosomal protein S4 (RPS4B) 161 6e-40
At2g17360.1 68415.m02005 40S ribosomal protein S4 (RPS4A) contai... 161 6e-40
At4g10710.1 68417.m01751 transcriptional regulator-related simil... 31 0.78
At3g24200.1 68416.m03037 monooxygenase family protein low simila... 29 3.1
At1g02730.1 68414.m00226 cellulose synthase family protein simil... 29 4.1
At5g16910.1 68418.m01982 cellulose synthase family protein simil... 27 9.6
>At5g58420.1 68418.m07315 40S ribosomal protein S4 (RPS4D) ribosomal
protein S4, Arabidopsis thaliana, PIR:T48480
Length = 262
Score = 161 bits (391), Expect = 4e-40
Identities = 81/151 (53%), Positives = 98/151 (64%)
Frame = +3
Query: 255 PAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTH 434
PAGFMDVVSI KTNE FRL+YD KGRF +H I EEAK+KLCKV+ + G K +PYL T+
Sbjct: 83 PAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSIQFGQKGIPYLNTY 142
Query: 435 DGRTIRYPDPLIKVNDSIQLDIATTRLWTSSSLSPGTCV*SREAVTWGFWAPSCPARENP 614
DGRTIRYPDPLIK ND+I+LD+ ++ G V G ++
Sbjct: 143 DGRTIRYPDPLIKPNDTIKLDLEANKIVEFIKFDVGNVVMVTGGRNRGRVGVIKNREKHK 202
Query: 615 GSFDIVHIKDSTGKTLATRLTNVSIIGKGPK 707
GSF+ +HI+DSTG ATRL NV IGKG K
Sbjct: 203 GSFETIHIQDSTGHEFATRLGNVYTIGKGTK 233
Score = 109 bits (261), Expect = 2e-24
Identities = 48/60 (80%), Positives = 53/60 (88%)
Frame = +2
Query: 11 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 190
MARG KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPLV+ +RNRLKYALT E
Sbjct: 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYRE 60
Score = 34.3 bits (75), Expect = 0.083
Identities = 14/24 (58%), Positives = 19/24 (79%)
Frame = +1
Query: 184 KRILKIVKQRLIKVDGKVRTDPTY 255
+ ++ I+ QR I+VDGKVRTD TY
Sbjct: 59 REVISILMQRHIQVDGKVRTDKTY 82
>At5g07090.1 68418.m00804 40S ribosomal protein S4 (RPS4B)
Length = 262
Score = 161 bits (390), Expect = 6e-40
Identities = 81/151 (53%), Positives = 98/151 (64%)
Frame = +3
Query: 255 PAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTH 434
PAGFMDVVSI KTNE FRL+YD KGRF +H I EEAK+KLCKV+ + G K +PYL T+
Sbjct: 83 PAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSIQFGQKGIPYLNTY 142
Query: 435 DGRTIRYPDPLIKVNDSIQLDIATTRLWTSSSLSPGTCV*SREAVTWGFWAPSCPARENP 614
DGRTIRYPDPLIK ND+I+LD+ ++ G V G ++
Sbjct: 143 DGRTIRYPDPLIKPNDTIKLDLEENKIVEFIKFDVGNVVMVTGGRNRGRVGVIKNREKHK 202
Query: 615 GSFDIVHIKDSTGKTLATRLTNVSIIGKGPK 707
GSF+ +HI+DSTG ATRL NV IGKG K
Sbjct: 203 GSFETIHIQDSTGHEFATRLGNVYTIGKGTK 233
Score = 109 bits (261), Expect = 2e-24
Identities = 48/60 (80%), Positives = 53/60 (88%)
Frame = +2
Query: 11 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 190
MARG KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPLV+ +RNRLKYALT E
Sbjct: 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYRE 60
Score = 34.3 bits (75), Expect = 0.083
Identities = 14/24 (58%), Positives = 19/24 (79%)
Frame = +1
Query: 184 KRILKIVKQRLIKVDGKVRTDPTY 255
+ ++ I+ QR I+VDGKVRTD TY
Sbjct: 59 REVISILMQRHIQVDGKVRTDKTY 82
>At2g17360.1 68415.m02005 40S ribosomal protein S4 (RPS4A) contains
ribosomal protein S4 signature from residues 8 to 22
Length = 261
Score = 161 bits (390), Expect = 6e-40
Identities = 81/151 (53%), Positives = 98/151 (64%)
Frame = +3
Query: 255 PAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTH 434
PAGFMDVVSI KTNE FRL+YD KGRF +H I EEAK+KLCKV+ + G K +PYL T+
Sbjct: 83 PAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSIQFGQKGIPYLNTY 142
Query: 435 DGRTIRYPDPLIKVNDSIQLDIATTRLWTSSSLSPGTCV*SREAVTWGFWAPSCPARENP 614
DGRTIRYPDPLIK ND+I+LD+ ++ G V G ++
Sbjct: 143 DGRTIRYPDPLIKPNDTIKLDLEENKIVEFIKFDVGNVVMVTGGRNRGRVGVIKNREKHK 202
Query: 615 GSFDIVHIKDSTGKTLATRLTNVSIIGKGPK 707
GSF+ +HI+DSTG ATRL NV IGKG K
Sbjct: 203 GSFETIHIQDSTGHEFATRLGNVYTIGKGTK 233
Score = 109 bits (261), Expect = 2e-24
Identities = 48/60 (80%), Positives = 53/60 (88%)
Frame = +2
Query: 11 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 190
MARG KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPLV+ +RNRLKYALT E
Sbjct: 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYRE 60
Score = 34.3 bits (75), Expect = 0.083
Identities = 14/24 (58%), Positives = 19/24 (79%)
Frame = +1
Query: 184 KRILKIVKQRLIKVDGKVRTDPTY 255
+ ++ I+ QR I+VDGKVRTD TY
Sbjct: 59 REVISILMQRHIQVDGKVRTDKTY 82
>At4g10710.1 68417.m01751 transcriptional regulator-related similar
to chromatin-specific transcription elongation factor
FACT 140 kDa subunit (GI:5499741) [Homo sapiens]
Length = 1074
Score = 31.1 bits (67), Expect = 0.78
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -2
Query: 135 KHSRNLWGPVDGLGAYTPPSLSNIHAL 55
KHS +LWG D L TPP+ ++ L
Sbjct: 44 KHSADLWGSADALAIATPPASDDLRYL 70
>At3g24200.1 68416.m03037 monooxygenase family protein low
similarity to VisC [Escherichia coli][GI:216629];
contains Pfam profile: PF01360 Monooxygenase
Length = 507
Score = 29.1 bits (62), Expect = 3.1
Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 8/63 (12%)
Frame = -1
Query: 718 KFYPFGP---LPIMDTFVNLVAKVFPVESLMCTMSKEPGFSLAGHDG-----AQKPQVTA 563
+F P GP LPI D F N+V + P E+ + E F A +D P+ T+
Sbjct: 282 RFLPNGPIALLPIGDKFSNIVWTMDPKEASDRKLMNEDDFIKAVNDALDSGYGPNPETTS 341
Query: 562 SRD 554
SRD
Sbjct: 342 SRD 344
>At1g02730.1 68414.m00226 cellulose synthase family protein similar
to cellulose synthase catalytic subunit [gi:13925881]
from Nicotiana alata, cellulose synthase-4 [gi:9622880]
from Zea mays
Length = 1181
Score = 28.7 bits (61), Expect = 4.1
Identities = 20/54 (37%), Positives = 28/54 (51%)
Frame = -1
Query: 700 PLPIMDTFVNLVAKVFPVESLMCTMSKEPGFSLAGHDGAQKPQVTASRDHTQVP 539
PL +T ++++A +PVE L C +S + G L AQ TAS T VP
Sbjct: 416 PLVTANTILSILAVDYPVEKLACYLSDDGGALLTFEALAQ----TASFASTWVP 465
>At5g16910.1 68418.m01982 cellulose synthase family protein similar
to gi:2827143 cellulose synthase catalytic subunit,
Arabidopsis thaliana, gi:9622886 cellulose synthase-7
from Zea mays
Length = 1145
Score = 27.5 bits (58), Expect = 9.6
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = -1
Query: 700 PLPIMDTFVNLVAKVFPVESLMCTMSKEPG 611
PL +T ++++A +PVE L C +S + G
Sbjct: 395 PLVTANTILSILAAEYPVEKLSCYVSDDGG 424
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,214,313
Number of Sequences: 28952
Number of extensions: 412208
Number of successful extensions: 1079
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1024
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1073
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1584903024
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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