Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30314
(703 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16E9.15 |||heat shock factor binding protein |Schizosaccharo... 28 1.1
SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr 3|... 28 1.5
SPBC1D7.01 |||prefoldin subunit 1 |Schizosaccharomyces pombe|chr... 28 1.5
SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein interm... 27 2.6
SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein Ndc80|... 27 2.6
SPBC14C8.13 |||SRR1 family protein|Schizosaccharomyces pombe|chr... 26 4.5
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo... 26 4.5
SPBC725.09c |hob3||BAR adaptor protein Hob3|Schizosaccharomyces ... 26 6.0
SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 25 7.9
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 25 7.9
>SPBC16E9.15 |||heat shock factor binding protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 75
Score = 28.3 bits (60), Expect = 1.1
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +3
Query: 144 GDFSVIDTEFSSIRERFDAEMRKMEEEMSKFRSELMNEKATIS 272
GDF + +FS E + ++EE M E MN+K+++S
Sbjct: 31 GDFETLQKQFSEKLETMSTRLDQLEESM----REAMNKKSSVS 69
>SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 512
Score = 27.9 bits (59), Expect = 1.5
Identities = 14/31 (45%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Frame = +3
Query: 144 GDFSVIDTEFSS-IRERFDAEMRKMEEEMSK 233
G F+ +D+E IRE +AE++KMEE+ K
Sbjct: 468 GVFTRVDSELGRRIREATEAEVKKMEEKAPK 498
>SPBC1D7.01 |||prefoldin subunit 1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 112
Score = 27.9 bits (59), Expect = 1.5
Identities = 16/71 (22%), Positives = 34/71 (47%)
Frame = +3
Query: 99 KMADSGLKRNIPIKLGDFSVIDTEFSSIRERFDAEMRKMEEEMSKFRSELMNEKATISSR 278
++ D G + + LG + ++ +S+R DAEM + E++ + + + T S+
Sbjct: 42 ELEDVGEDKAVYTSLGKM-FMKSDLASVRTHLDAEMASLREDIEALQKKQTYHETTASNA 100
Query: 279 AQLARRHLHSI 311
Q ++ SI
Sbjct: 101 EQHLQKIKESI 111
>SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein
intermediate chain Dic1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 544
Score = 27.1 bits (57), Expect = 2.6
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +1
Query: 559 NPEGH*VFRCSRDGVAYPWETPFATTRPS 645
NP + + CS DG+ + WE P +RPS
Sbjct: 302 NPPSNNIVTCSTDGLVHIWE-PDMFSRPS 329
>SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein
Ndc80|Schizosaccharomyces pombe|chr 2|||Manual
Length = 624
Score = 27.1 bits (57), Expect = 2.6
Identities = 13/57 (22%), Positives = 26/57 (45%)
Frame = +3
Query: 114 GLKRNIPIKLGDFSVIDTEFSSIRERFDAEMRKMEEEMSKFRSELMNEKATISSRAQ 284
G++ + L + +++ S + FDAE K+E E+ + + N + R Q
Sbjct: 507 GIESRLTSVLSECNMLRETASEEKNAFDAESDKLERELQQLKLSSHNSMLQLDQRIQ 563
>SPBC14C8.13 |||SRR1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 251
Score = 26.2 bits (55), Expect = 4.5
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -2
Query: 630 GKGRFPRVSNTVPGTAKDL 574
G+G+FP+VSNT+ DL
Sbjct: 15 GRGKFPKVSNTITQGDTDL 33
>SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1588
Score = 26.2 bits (55), Expect = 4.5
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +1
Query: 586 CSRDGVAYPWETPFATTRPSRXRNISYSRS 675
CS++G YPW T +T PS + +YS S
Sbjct: 1503 CSKEGKLYPWNTRPRST-PSVWLSQAYSPS 1531
>SPBC725.09c |hob3||BAR adaptor protein Hob3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 264
Score = 25.8 bits (54), Expect = 6.0
Identities = 10/29 (34%), Positives = 20/29 (68%)
Frame = +2
Query: 509 SVYXDYTRGVLLPQGEQILRAIKSFAVPG 595
SV DY+ G+L + EQ+L++++ ++ G
Sbjct: 231 SVREDYSNGLLDDKVEQVLQSMRDLSIAG 259
>SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 583
Score = 25.4 bits (53), Expect = 7.9
Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 1/86 (1%)
Frame = +2
Query: 143 WRFFGYRYRILKHQRALRCRNEEDGRRNEQIQIRTHERESNNFFKXXXXXXXXXQHSDS- 319
W F R+L +RA R RN+E N + RT ER + F+ ++S S
Sbjct: 42 WNRFPSLQRVLGLRRAKRHRNDEGNSENGN-RDRTTERSA---FRSRYRGSLLNRNSPSL 97
Query: 320 RQLAEPSHWDSLNSPLIQDEGDGQDS 397
R L+ P+ + +P + EG+ Q S
Sbjct: 98 RSLSPPA---TPATPRSRIEGESQTS 120
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 25.4 bits (53), Expect = 7.9
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = +2
Query: 125 KYPHQAWRFFGYRY 166
+YP AW+FF RY
Sbjct: 1511 RYPEDAWKFFMVRY 1524
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,862,123
Number of Sequences: 5004
Number of extensions: 59403
Number of successful extensions: 188
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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