Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30314
(703 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0547 - 4774320-4776089,4776823-4777028,4777563-4777818 30 1.5
10_08_1036 + 22470642-22470664,22470850-22471024,22471133-22473766 30 2.0
04_03_0119 + 11485753-11486202 30 2.0
08_02_0949 - 22920363-22920685,22922621-22922824,22923170-229232... 29 2.7
07_03_0943 - 22778877-22780970,22781376-22781480,22781481-227820... 29 2.7
04_04_1683 + 35345506-35345581,35346171-35346343,35346706-353467... 29 4.7
03_05_0520 + 25139314-25139364,25139580-25139711,25141594-251417... 28 6.2
03_01_0082 + 653041-653137,653219-653496,653596-653689,653804-65... 28 6.2
06_03_0056 - 16046535-16047309,16047625-16048784,16049233-160493... 28 8.3
04_04_1105 - 30942735-30942791,30943116-30943466,30943670-309437... 28 8.3
04_04_0772 + 27970494-27972875 28 8.3
>05_01_0547 - 4774320-4776089,4776823-4777028,4777563-4777818
Length = 743
Score = 30.3 bits (65), Expect = 1.5
Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = +3
Query: 183 RERFDAEMRKMEEEMSKFRSELMNEKATISSRAQLARRHLHSIVTAD-SLPSQ 338
RE F+ +K+EEE++ + E++ + IS+ L + VT++ S P Q
Sbjct: 658 RENFETMSKKLEEELATAKGEILRLRRQISASGYLRTELAETSVTSNTSQPEQ 710
>10_08_1036 + 22470642-22470664,22470850-22471024,22471133-22473766
Length = 943
Score = 29.9 bits (64), Expect = 2.0
Identities = 22/90 (24%), Positives = 43/90 (47%)
Frame = +3
Query: 42 RERFSVCLVSTISTRQIT*KMADSGLKRNIPIKLGDFSVIDTEFSSIRERFDAEMRKMEE 221
++ ++ + +T + RQI AD+ + + + S + +E + E A + K+E
Sbjct: 188 KDELALAVEATNTARQI----ADANADKAATLA-AEVSRLQSELETKAEEATAIVAKLES 242
Query: 222 EMSKFRSELMNEKATISSRAQLARRHLHSI 311
E S R+EL N +A+ A + LH +
Sbjct: 243 EASGLRAELQNAEASRKEDVGRAEQLLHGL 272
>04_03_0119 + 11485753-11486202
Length = 149
Score = 29.9 bits (64), Expect = 2.0
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +3
Query: 477 PRQTRGESDTNLCTXITPGEFCCPKGNKS*GPLSLSLFPGRCC 605
P S T+ CT ++PG CC + + PLS L+P C
Sbjct: 78 PASPPPSSATSTCTALSPGTSCCRRCRRV-SPLSCMLWPEIDC 119
>08_02_0949 -
22920363-22920685,22922621-22922824,22923170-22923263,
22923376-22923470,22923612-22923783
Length = 295
Score = 29.5 bits (63), Expect = 2.7
Identities = 26/89 (29%), Positives = 37/89 (41%), Gaps = 2/89 (2%)
Frame = -2
Query: 615 PRVSNTVPGTAKDLMALRICSPWGNKTPLV*SXYTDSYQIPLVFGVDQVICCRQS*QP-- 442
P S+T KD + R +P GN+T T + PL V+ +P
Sbjct: 166 PHASDTGASADKDCSSKRPATPEGNETASSKRSRTTAAPPPLSGAGTSVVYPFAVVKPSG 225
Query: 441 ISSGSILADIKAKLGESCPSPSS*MSGEF 355
+ G+ LADI A++ P P GEF
Sbjct: 226 LDGGATLADINARILTRPPRPVRHPVGEF 254
>07_03_0943 -
22778877-22780970,22781376-22781480,22781481-22782059,
22782149-22782187,22782340-22782372
Length = 949
Score = 29.5 bits (63), Expect = 2.7
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +2
Query: 170 ILKHQRALRCRNEEDGRRNEQIQIRTHERE 259
+ K +R + C+NE GRRN R H ++
Sbjct: 629 VAKRRRLVSCKNERTGRRNTAANKRQHGKQ 658
>04_04_1683 +
35345506-35345581,35346171-35346343,35346706-35346739,
35346919-35347055,35347356-35347422,35347645-35347744,
35348375-35348538,35349023-35349069,35349177-35349224,
35349463-35349976,35350190-35350278,35350472-35350549,
35350972-35351019
Length = 524
Score = 28.7 bits (61), Expect = 4.7
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = -2
Query: 594 PGTAKDLMALRICSPWGNKTPLV*SXYTDSYQIPLVFGVDQ 472
PG+A+ + +++CS WG P+ + D PL+ DQ
Sbjct: 449 PGSARGVKMVKVCSTWGCIFPV----FLDKVCFPLLLPTDQ 485
>03_05_0520 +
25139314-25139364,25139580-25139711,25141594-25141731,
25143191-25143241,25143662-25143751,25143854-25144000,
25144108-25144218,25144307-25144375,25144777-25145517,
25145840-25146004,25146376-25146442,25146580-25146704,
25148714-25148983,25149065-25149199,25149316-25149497,
25149669-25149744
Length = 849
Score = 28.3 bits (60), Expect = 6.2
Identities = 9/31 (29%), Positives = 24/31 (77%)
Frame = +3
Query: 156 VIDTEFSSIRERFDAEMRKMEEEMSKFRSEL 248
V DTE ++ +E+F+A+++K +++ ++R ++
Sbjct: 18 VYDTENANQKEKFEADLKKEIKKLQRYRDQI 48
>03_01_0082 + 653041-653137,653219-653496,653596-653689,653804-653886,
654027-654247,654395-654533,654628-654710,654824-655036,
655099-655494,655587-655758,656085-656276,656363-656569,
656661-656753,656957-657156,657329-657838,658114-658184,
658322-658963,659057-659207,659425-659665
Length = 1360
Score = 28.3 bits (60), Expect = 6.2
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = -1
Query: 169 SVSITEKSPSLMGIFLLRPLSAIFHVICRVEI-VETKQTLKRSRVNDFHWNNTH 11
S+ I+ S ++ ++L+P A IC + V++KQ+LK F W +TH
Sbjct: 884 SLLISVGSKQVLTTWVLQPKVAENRHICSSGLDVDSKQSLKGDSAMTFQWLSTH 937
>06_03_0056 -
16046535-16047309,16047625-16048784,16049233-16049340,
16049487-16049672,16050342-16050398
Length = 761
Score = 27.9 bits (59), Expect = 8.3
Identities = 12/24 (50%), Positives = 12/24 (50%)
Frame = +3
Query: 489 RGESDTNLCTXITPGEFCCPKGNK 560
R E NL TP EFCCP K
Sbjct: 258 RCEEQNNLSRFSTPPEFCCPLSMK 281
>04_04_1105 - 30942735-30942791,30943116-30943466,30943670-30943762,
30943869-30944072,30944155-30944399,30945019-30945877,
30946070-30946936,30947113-30947562
Length = 1041
Score = 27.9 bits (59), Expect = 8.3
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
Frame = +3
Query: 111 SGLKRNIPIKLGDFSVIDTEFSSIRERFDAEMRK----MEEEMSKFRSELMNEKATISSR 278
SGLK +K +D + I E A +RK MEE K + +L N + T+S+
Sbjct: 941 SGLKEKAALKASFKEAVDAK--EIAENEAATLRKKMMVMEESQKKLQEDLANMRNTVSAM 998
Query: 279 AQL 287
++
Sbjct: 999 QKM 1001
>04_04_0772 + 27970494-27972875
Length = 793
Score = 27.9 bits (59), Expect = 8.3
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = +2
Query: 314 DSRQLAEPSHWDSLNSPLIQDEGDGQDSPSFALMSASILPEEIGC 448
D L+EP + + PL+ D GDG + L + ++ + I C
Sbjct: 380 DGESLSEPKDFGAEMRPLVHDVGDGMCTTESVLRAMNVTGKIIIC 424
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,645,328
Number of Sequences: 37544
Number of extensions: 396556
Number of successful extensions: 1051
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1017
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1050
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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