Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30314
(703 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_29594| Best HMM Match : Pox_A_type_inc (HMM E-Value=8.4e-06) 30 1.6
SB_961| Best HMM Match : CUB (HMM E-Value=3.4e-08) 29 2.8
SB_11234| Best HMM Match : DSPc (HMM E-Value=2.4e-29) 29 3.6
SB_21648| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_45991| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.074) 29 4.8
SB_9863| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8
SB_1753| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8
SB_45697| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8
SB_37620| Best HMM Match : IncA (HMM E-Value=0.39) 28 8.4
SB_26444| Best HMM Match : CAP_GLY (HMM E-Value=1.2e-23) 28 8.4
>SB_29594| Best HMM Match : Pox_A_type_inc (HMM E-Value=8.4e-06)
Length = 1292
Score = 30.3 bits (65), Expect = 1.6
Identities = 17/46 (36%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Frame = +3
Query: 195 DAEMRKMEEEMSKFRSELMNEKATISS-RAQLARRHLHSIVTADSL 329
D ++ ++EM K SEL++ K+T+ + RAQL + + I DSL
Sbjct: 795 DGSLKLQQDEMQKASSELLDTKSTMDALRAQLVEKQ-NKISELDSL 839
Score = 28.7 bits (61), Expect = 4.8
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Frame = +3
Query: 72 TISTRQIT*KMADSGLKRNIPIKLGD-FSVIDTEFSSIRERFDAEMRKMEEEMSKFRSEL 248
TI T +IT + K I +L D + + E S F+ +RK +E+ ++ +L
Sbjct: 1063 TILTEEITELKQELKKKDGIISELNDNLTSFEDEHDSEVSVFNENLRKQQEQTAELEKQL 1122
Query: 249 MNEKATISSRAQ 284
+ E SSR Q
Sbjct: 1123 VLEMGNESSRHQ 1134
>SB_961| Best HMM Match : CUB (HMM E-Value=3.4e-08)
Length = 490
Score = 29.5 bits (63), Expect = 2.8
Identities = 19/73 (26%), Positives = 29/73 (39%), Gaps = 2/73 (2%)
Frame = +3
Query: 477 PRQTRGESDTNLCTXITPGEFCCPKGNKS*GPLSLSLFPGRCCLPVGNALCH--NSAITX 650
P +T G + T +FCC G + +SL L P +A+C A+
Sbjct: 18 PNRTMGTLPDGVYNENTLYDFCCSTGGSTSDAISLPLDSPFYLFPYQSAMCQKVKGALIN 77
Query: 651 QEHFLFQKPLKRV 689
E+ F +K V
Sbjct: 78 TEYIWFHTDMKNV 90
>SB_11234| Best HMM Match : DSPc (HMM E-Value=2.4e-29)
Length = 2072
Score = 29.1 bits (62), Expect = 3.6
Identities = 11/41 (26%), Positives = 26/41 (63%)
Frame = +3
Query: 156 VIDTEFSSIRERFDAEMRKMEEEMSKFRSELMNEKATISSR 278
++++E + +RE+ E+ +MEE M + + + E+A+I +
Sbjct: 836 LMESEITELREKHQQELGEMEERMKELQKQHDAEQASIKKK 876
>SB_21648| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 119
Score = 29.1 bits (62), Expect = 3.6
Identities = 16/59 (27%), Positives = 29/59 (49%)
Frame = +3
Query: 195 DAEMRKMEEEMSKFRSELMNEKATISSRAQLARRHLHSIVTADSLPSQVTGIA*TRRSF 371
D +RK+++E+SKF+ EL + A I+ + L V + + +T +R F
Sbjct: 2 DKHLRKLDQELSKFKMELEADNAGITEVLEQRSLRLDEPVNSPMSNNHITTSHIQKRKF 60
>SB_45991| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.074)
Length = 134
Score = 28.7 bits (61), Expect = 4.8
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +3
Query: 201 EMRKMEEEMSKFRSELMNEKATISSRAQLARRHLHSI 311
EM+K EE M K +E+M E ++ Q AR + +
Sbjct: 5 EMKKKEERMEKQMNEIMAENKRLTEPLQKAREEVEEL 41
>SB_9863| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 639
Score = 28.7 bits (61), Expect = 4.8
Identities = 15/59 (25%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Frame = +3
Query: 135 IKLGDFSVIDTE-FSSIRERFDAEMRKMEEEMSKFRSELMNEKATISSRAQLARRHLHS 308
+ +GDF + + FS RFDA++ M++ + K +++ ++ + LA H H+
Sbjct: 255 VAVGDFVSKEVDAFSRYVPRFDAKVPNMDKYLEKRLKMILSSLILVALASSLANCHSHN 313
>SB_1753| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 377
Score = 28.7 bits (61), Expect = 4.8
Identities = 15/30 (50%), Positives = 20/30 (66%)
Frame = -3
Query: 110 VSHFSRYLPRGNCRN*TNTETFSRKRLSLE 21
+SHFSR+LPR C++ TN +R SLE
Sbjct: 203 LSHFSRWLPR-CCQSRTNVHVLVYERGSLE 231
>SB_45697| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 734
Score = 28.7 bits (61), Expect = 4.8
Identities = 17/50 (34%), Positives = 26/50 (52%)
Frame = +3
Query: 159 IDTEFSSIRERFDAEMRKMEEEMSKFRSELMNEKATISSRAQLARRHLHS 308
++ E SS+RE DA RKM ++SK +L A + S+ + HS
Sbjct: 255 LEKEISSLREIVDARERKM-VQLSKDNIDLQETNAILRSQLEQLESMQHS 303
>SB_37620| Best HMM Match : IncA (HMM E-Value=0.39)
Length = 307
Score = 27.9 bits (59), Expect = 8.4
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = +2
Query: 146 RFFGYRYRILKHQRALRCRNEEDGRRNEQIQIRTHERES 262
RF+GY + R R E G++ EQ I HER S
Sbjct: 78 RFWGYEELKMALNRLRHEREIEQGKQGEQKDIHLHERLS 116
>SB_26444| Best HMM Match : CAP_GLY (HMM E-Value=1.2e-23)
Length = 1024
Score = 27.9 bits (59), Expect = 8.4
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
Frame = +3
Query: 78 STRQIT*KMADSGLKRNIPIK----LGDFSVIDTEFSSIRERFDAEMRKMEEEMSKFRSE 245
S R+I K DS KR I + + DF V E S+ + D EMRK + + + +
Sbjct: 551 SNREIQEKQEDSE-KRLIDLPPTPDIMDFKVKSAEIKSLAKSVDNEMRKFQVQQANEHIK 609
Query: 246 LMN 254
++N
Sbjct: 610 MLN 612
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,573,761
Number of Sequences: 59808
Number of extensions: 464965
Number of successful extensions: 1220
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1220
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1841633001
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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